Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64510 226 / 4e-75 Translation elongation factor EF1B/ribosomal protein S6 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032419 [exp] 391 / 4e-140 AT1G64510 241 / 6e-81 Translation elongation factor EF1B/ribosomal protein S6 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G088300 [exp] 246 / 5e-83 AT1G64510 263 / 3e-90 Translation elongation factor EF1B/ribosomal protein S6 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01250 [flax] [poplar] Ribosomal_S6 Ribosomal protein S6
Representative CDS sequence Show only first row Show all	>Lus10023054 pacid=23170393 polypeptide=Lus10023054 locus=Lus10023054.g ID=Lus10023054.BGIv1.0 annot-version=v1.0 ATGGCGTCCTCAGCAGTTTCGTCTGCTCTATTCTACTCCCCAATTTGCTCCAAATCTCTTTCGAAGTCCAACCCATCACCTTCGTCAGCATTTCTTGGGC GGTTTAATGCGAATGCGACGGTGATTGTCCACCGTGTGAGAGACCGCGAAAGCGTGGTGAAGGCACAGACATTTGATTTCTCCGGTTCGTTCTATGGAGG AAGGTTTGCCTCCGACGACGACGACGACGATGACGACAACGAACCTCCGATGCAGGGCACCCTGATGGAAATGGAGAAAAGAGAGACCCCTCCTTGCCCG CCTGGGCTGCGACAGTACGAGACCATGTCTGTGTTGAGGCCGGACATGTCTGAAGATGAACGGCTTGCTCTTACACAGAAGTACGAAGAGTTGCTTGTAG CTGGGGGTGGGATGTATGTGGAGGCATTCAACAGAGGAGTGCTTCCACTATCCTACAGCATCAAGAAGAAGAACAAAGCTGGTGAAACCAACACCTATAT GGATGGGATCTACCTCCTCTTCACTTACTTCACAAAACCAGAATCCTTGAACGCCCTAGAAACAACTATGAATACTGATGATGACGTGATCCGACACAGC ACTTTCAAAATCAGGAAGAGGAAGATAGATCTTCCCTATGAATCCGATGAATACGCTACTGAGGTAGAGGCTGGACTATGA
AA sequence Show only first row Show all	>Lus10023054 pacid=23170393 polypeptide=Lus10023054 locus=Lus10023054.g ID=Lus10023054.BGIv1.0 annot-version=v1.0 MASSAVSSALFYSPICSKSLSKSNPSPSSAFLGRFNANATVIVHRVRDRESVVKAQTFDFSGSFYGGRFASDDDDDDDDNEPPMQGTLMEMEKRETPPCP PGLRQYETMSVLRPDMSEDERLALTQKYEELLVAGGGMYVEAFNRGVLPLSYSIKKKNKAGETNTYMDGIYLLFTYFTKPESLNALETTMNTDDDVIRHS TFKIRKRKIDLPYESDEYATEVEAGL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G64510			Translation elongation factor...		Lus10023054 [exp]	0	1
AT1G64510			Translation elongation factor...		Lus10032419 [exp]	2.0	0.9733
AT1G29070			Ribosomal protein L34 (.1)		Lus10013928 [exp]	2.0	0.9780
AT3G15520			Cyclophilin-like peptidyl-prol...		Lus10038601 [exp]	2.4	0.9676
AT5G39530			Protein of unknown function (D...		Lus10024051 [exp]	2.8	0.9711
AT3G08920			Rhodanese/Cell cycle control p...		Lus10004811 [exp]	3.9	0.9697
AT1G07320		EMB2784, RPL4	EMBRYO DEFECTIVE 2784, ribosom...		Lus10040693 [exp]	4.9	0.9649
AT1G48350		EMB3105	EMBRYO DEFECTIVE 3105, Ribosom...		Lus10038770 [exp]	5.7	0.9719
AT2G43030			Ribosomal protein L3 family pr...		Lus10013640 [exp]	6.0	0.9643
AT3G56910		PSRP5	plastid-specific 50S ribosomal...		Lus10037307 [exp]	7.0	0.9654
AT2G43030			Ribosomal protein L3 family pr...		Lus10001337 [exp]	7.4	0.9632

Compare expression of checked genes

Lus10023054 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.