Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24015 130 / 3e-38 RING/U-box superfamily protein (.1) AT1G33480 89 / 3e-21 RING/U-box superfamily protein (.1) AT4G10150 82 / 6e-19 RING/U-box superfamily protein (.1) AT4G10160 81 / 2e-18 RING/U-box superfamily protein (.1) AT3G16720 71 / 2e-14 ATL2 TOXICOS EN LEVADURA 2 (.1) AT1G04360 68 / 4e-13 RING/U-box superfamily protein (.1) AT2G35910 66 / 5e-13 RING/U-box superfamily protein (.1) AT1G23980 65 / 3e-12 RING/U-box superfamily protein (.1) AT5G47610 62 / 4e-12 RING/U-box superfamily protein (.1) AT5G43420 65 / 5e-12 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032418 [exp] 266 / 6e-91 AT4G24015 180 / 9e-58 RING/U-box superfamily protein (.1) Lus10006493 [exp] 68 / 2e-13 AT3G16720 221 / 5e-71 TOXICOS EN LEVADURA 2 (.1) Lus10037490 [exp] 67 / 6e-13 AT3G16720 224 / 2e-70 TOXICOS EN LEVADURA 2 (.1) Lus10025338 [exp] 63 / 3e-12 AT4G17905 99 / 4e-25 RING/U-box superfamily protein (.1) Lus10029178 [exp] 65 / 5e-12 AT5G40250 297 / 1e-98 RING/U-box superfamily protein (.1) Lus10021197 [exp] 64 / 5e-12 AT1G04360 268 / 2e-87 RING/U-box superfamily protein (.1) Lus10012987 [exp] 64 / 7e-12 AT5G40250 302 / 7e-101 RING/U-box superfamily protein (.1) Lus10032290 [exp] 62 / 7e-12 AT3G61460 200 / 2e-66 brassinosteroid-responsive RING-H2 (.1) Lus10019973 [exp] 64 / 9e-12 AT4G30400 252 / 4e-80 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G088400 [exp] 172 / 3e-53 AT4G24015 117 / 1e-32 RING/U-box superfamily protein (.1) Potri.003G142600 [exp] 151 / 2e-45 AT4G24015 144 / 3e-43 RING/U-box superfamily protein (.1) Potri.013G095100 [exp] 90 / 1e-21 AT4G10150 159 / 3e-48 RING/U-box superfamily protein (.1) Potri.008G165900 [exp] 69 / 2e-13 AT1G04360 312 / 2e-104 RING/U-box superfamily protein (.1) Potri.015G073600 [exp] 69 / 2e-13 AT5G40250 259 / 1e-83 RING/U-box superfamily protein (.1) Potri.010G072700 [exp] 67 / 5e-13 AT5G43420 300 / 7e-100 RING/U-box superfamily protein (.1) Potri.008G219200 [exp] 66 / 7e-13 AT3G16720 197 / 2e-61 TOXICOS EN LEVADURA 2 (.1) Potri.003G192700 [exp] 64 / 1e-12 AT5G07040 194 / 3e-64 RING/U-box superfamily protein (.1) Potri.012G078200 [exp] 65 / 4e-12 AT5G40250 241 / 1e-76 RING/U-box superfamily protein (.1) Potri.008G071000 [exp] 62 / 7e-12 AT3G11110 122 / 3e-36 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10023055 pacid=23170302 polypeptide=Lus10023055 locus=Lus10023055.g ID=Lus10023055.BGIv1.0 annot-version=v1.0 ATGGGTTTTGCTCCTCAGGAAAGTCCAGCTTCTCCCCATCTATACCCTCAAGAACTTCAGCTTAAACTCTACCAAGCTTTCATATTCTCAATCCCAATTC TCTTCTCAATCATTCTTATTCTTCTCTTCTACCTCTTCTACCTCAAGAGGAGAGCTACCACCCTTTCATCCTCCCAGCACTTCCTTCCTTCATCTTCTTC CAGCCAATCCGGTTCGCAGTTTTCCTCTGTTTGTCAGGTTGGTTTAAAGGAGAAACTCAGTGAGAAGCTCCAAATTGTTCTGTTTGATGAAGAGATGAAG TCCAGGGAATCACAGTGTTGTGTTTGCTTGGGAGAATTTGAGATGAAAGAAGAGCTGCTGCAGATCTCATTATGCAGGCATGTTTTCCATATGGACTGCA TCCACCATTGGCTACACACAAACTCCACTTGTCCACTCTGCAGATGTTTTGTCATCCCAGCTATCACCAAGTTCATTACTGTCCCTAGTATCCAATCCGG TGGCTCCCCGGGTGATAATGCTGTCACGATTCGGACAGAGAATGTGGCGATGCCTGAAGAAGAACATCAACAGCAGCAGGACGAACATCATATTGTAGTT GCAGCAAGTTCACATGAGCAACATTATTCGATACGTGTCGAAAGATCTTCAAGTTCGGAGCATTCCTGA
AA sequence Show only first row Show all	>Lus10023055 pacid=23170302 polypeptide=Lus10023055 locus=Lus10023055.g ID=Lus10023055.BGIv1.0 annot-version=v1.0 MGFAPQESPASPHLYPQELQLKLYQAFIFSIPILFSIILILLFYLFYLKRRATTLSSSQHFLPSSSSSQSGSQFSSVCQVGLKEKLSEKLQIVLFDEEMK SRESQCCVCLGEFEMKEELLQISLCRHVFHMDCIHHWLHTNSTCPLCRCFVIPAITKFITVPSIQSGGSPGDNAVTIRTENVAMPEEEHQQQQDEHHIVV AASSHEQHYSIRVERSSSSEHS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G24015			RING/U-box superfamily protein...		Lus10023055 [exp]	0	1
AT5G05930		ATGC1	ARABIDOPSIS GUANYLYL CYCLASE 1...		Lus10009875 [exp]	3.2	0.7702
AT3G24840			Sec14p-like phosphatidylinosit...		Lus10038176 [exp]	3.5	0.7769
AT1G48745			unknown protein		Lus10007969 [exp]	5.1	0.6574
AT2G43490			Ypt/Rab-GAP domain of gyp1p su...		Lus10004802 [exp]	7.4	0.7356
AT4G05150			Octicosapeptide/Phox/Bem1p fam...		Lus10002588 [exp]	10.7	0.7480
AT5G07920		ATDGK1, DGK1	DIACYLGLYCEROL KINASE 1, diacy...		Lus10034701 [exp]	18.3	0.6659
AT4G26700		ATFIM1	ARABIDOPSIS THALIANA FIMBRIN 1...		Lus10014894 [exp]	21.5	0.7060
AT4G24015			RING/U-box superfamily protein...		Lus10032418 [exp]	32.3	0.7471
AT1G22150		SULTR1;3	sulfate transporter 1;3 (.1)		Lus10029616 [exp]	32.6	0.7317
AT4G36760		ATAPP1	ARABIDOPSIS THALIANA AMINOPEPT...		Lus10041716 [exp]	40.6	0.6703

Compare expression of checked genes

Lus10023055 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.