Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23990 747 / 0 ATCSLG3 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE G3, cellulose synthase like G3 (.1) AT4G24000 733 / 0 ATCSLG2 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE LIKE G2, cellulose synthase like G2 (.1) AT4G24010 706 / 0 CSLG2, ATCSLG1 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE LIKE G1, cellulose synthase like G1 (.1) AT1G55850 441 / 1e-144 ATCSLE1 cellulose synthase like E1 (.1) AT5G17420 348 / 4e-106 ATCESA7, MUR10, IRX3 MURUS 10, IRREGULAR XYLEM 3, CELLULOSE SYNTHASE CATALYTIC SUBUNIT 7, Cellulose synthase family protein (.1) AT4G32410 305 / 8e-90 AtCESA1, RSW1, CESA1 RADIALLY SWOLLEN 1, cellulose synthase 1 (.1) AT2G32540 288 / 5e-86 ATCSLB4, ATCSLB04 CELLULOSE SYNTHASE LIKE B4, cellulose synthase-like B4 (.1) AT2G32530 284 / 1e-84 ATCSLB3, ATCSLB03 cellulose synthase-like B3 (.1) AT2G32620 283 / 3e-84 ATCSLB2, ATCSLB02 CELLULOSE SYNTHASE LIKE B2, cellulose synthase-like B (.1) AT3G03050 286 / 7e-83 RHD7, ATCSLD3, KJK, CSLD3 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032415 [exp] 761 / 0 AT4G23990 813 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE G3, cellulose synthase like G3 (.1) Lus10023057 [exp] 736 / 0 AT4G23990 816 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE G3, cellulose synthase like G3 (.1) Lus10003196 [exp] 716 / 0 AT4G23990 815 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE G3, cellulose synthase like G3 (.1) Lus10016625 [exp] 424 / 1e-137 AT1G55850 801 / 0.0 cellulose synthase like E1 (.1) Lus10006161 [exp] 308 / 3e-91 AT5G64740 1734 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) Lus10002134 [exp] 288 / 7e-84 AT3G03050 1473 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Lus10030453 [exp] 280 / 2e-82 AT3G03050 1584 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Lus10013851 [exp] 280 / 2e-80 AT4G38190 1876 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE D4, cellulose synthase like D4 (.1) Lus10026568 [exp] 279 / 2e-80 AT4G38190 1868 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE D4, cellulose synthase like D4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G142400 [exp] 813 / 0 AT4G23990 850 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE G3, cellulose synthase like G3 (.1) Potri.003G142500 [exp] 808 / 0 AT4G23990 809 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE G3, cellulose synthase like G3 (.1) Potri.006G004300 [exp] 465 / 9e-154 AT1G55850 762 / 0.0 cellulose synthase like E1 (.1) Potri.001G369100 [exp] 452 / 5e-149 AT1G55850 887 / 0.0 cellulose synthase like E1 (.1) Potri.010G074700 [exp] 437 / 5e-143 AT4G24010 469 / 2e-155 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE LIKE G1, cellulose synthase like G1 (.1) Potri.010G074800 [exp] 429 / 1e-139 AT4G24000 471 / 2e-156 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE LIKE G2, cellulose synthase like G2 (.1) Potri.002G227300 [exp] 365 / 4e-115 AT2G32540 712 / 0.0 CELLULOSE SYNTHASE LIKE B4, cellulose synthase-like B4 (.1) Potri.014G155300 [exp] 337 / 1e-104 AT2G32540 711 / 0.0 CELLULOSE SYNTHASE LIKE B4, cellulose synthase-like B4 (.1) Potri.018G103900 [exp] 323 / 9e-97 AT5G17420 1730 / 0.0 MURUS 10, IRREGULAR XYLEM 3, CELLULOSE SYNTHASE CATALYTIC SUBUNIT 7, Cellulose synthase family protein (.1) Potri.006G181900 [exp] 314 / 1e-93 AT5G17420 1730 / 0.0 MURUS 10, IRREGULAR XYLEM 3, CELLULOSE SYNTHASE CATALYTIC SUBUNIT 7, Cellulose synthase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF03552 [flax] [poplar] Cellulose_synt Cellulose synthase
Representative CDS sequence Show only first row Show all	>Lus10023056 pacid=23170291 polypeptide=Lus10023056 locus=Lus10023056.g ID=Lus10023056.BGIv1.0 annot-version=v1.0 ATGGCAACTTCTCCGACCAACCTTCCACCTCTCCACCAACTCCGGCCACTCCCTCACGCCGTCATCAACCGACTCTTCGCCGCAGTCTACGCTTCTGCCG TCTTAGCCTTACTCTACCGCCACACCACGTCACTCCTCTTCCTCCACAAAACCTCCCTATCCGTAACCTTACTACACCTTACCTTCCTAATCTCCGACCT CGTACTCGCCTTCATGTGGCTCACCGCTCAGGCCCTCCGCATATTCCCCGTTCGTCGGGAGCAGTTCCCGGCCAACCTCGAGAAGGTTGTGCCTGGCGGT GAGGAAGAGTTTCCTGCTCTGGACGTGTTCATATGCACGGCGGATCCGTACAAGGAGCCGCCATTGACGGTGGTGAACACGGCGTTGTCGGTGATGGCGT ATGAGTACCCGACGGAGAAGCTGTCGGTGTACGTGTCGGATGACGGCGGGTCGGCGTTGACTCTGTTTGCGTTCATGGAGGCTGCTAAGTTCGCTGCACA CTGGCTGCCGTTTTGCAGGGAGAACGACGTCGTTGATAGGAGTCCCGATGTTTACTTGGCGTCGTCGTATTGCTCGTCTCCTGAGACCAACAAGATCAAG ATGATGTACGACGAGATGAAAGAGAAGATTGAAGGAGCGGTGGAGAAAGGAGGAGTCGACGGGGAGTCCCTTACAACTGACGCAGAGCGTCGAGCTTTCA ATAAATGGAATGATAATAATTCCTCCTTCTCAACCAACAACCACCCTCCTGTGCTTCAGATTCTGCTGGACAACAAGCGGAACAAGGACAGAGCTGGCGG TTTCTTGCCGAGCCTTATCTATGTTTCTCGAGAGAAAAGCACAACTACTCACCATCACTTCAAAGCCGGCGCCCTTAATGTTCTGCTGCGAGTATCTGCT GTATTGACGAATGCGCCCTTGATCCTGACACTAGACTGTGACATGCTCTCAACCAACCCACGTACTCCTCTCCACGTGCTCTGCTACTACTTCTCCGTCG GCGACAGCTTCCGCTCCAGCCACGCATTCGTCCAGTTCCCCCAGCGTTTCCGGGGTATCAACAGGGATGACATCTACGCCGGCGACCTCAAAAATTTTGG CACTGTTCTTCCATTTGGGTTCGACGGCTTGATGGGCCCCATACATATGGGAACCTGCTGTTTCTTCAACCGCCGCGCTTTCTTCGGCGGTCCTTCTGAT TCCGACTTTGTCCCGCCGGAAATCCCGCAGCTGTTCCCGGGCCGTATGGTTGATAAGCCCATTCATGATCAGGATTTATTGGGCTTGGCCCATCGGGTGG CTAGATGTGACTACGAGGCCCGAACTCACTGGGGCACCAAGATGGGATTCAGATATGGAACGTTGGTGGAGGACCTGTACACGGGATTCCGCTTACAGTG CGAAGGGTGGAGATCCATATGGTGCTACCCAGAGAGTCCATTCTTTTTGGGTGACTCCCCTACAAGCTTTGCGGACCTACTGATCCAGCAGAGCCGTTGG CAAATTGGGCTTCTTGAGATCAGCCTCTGTCAACATAGCCCATTAGTTTTCGGCATCAAGAAGCTGGGCCTTCTACTGGGTCTGGGCTATTGCCATTATA CACTATGGATTGTTTGGGTTCTCCCCGTCACCACCTATGCTTTCCTCCCACAACTTGCCCTTCTAAATGGTGTCTCCATCTTCCCAAAGGCTTCGGATCC ATGGTTTCTGGTATACGCCTTCCTTTTCCTGGGGGCGTACGGACAAGACATGCTGGAGTTCCTAACCATAGACAACAGAGGAACATTCCGGCGGTGGTGG AACGACCAGCGGATGTGGATCGTAAGAGGCCTCTCCTGTTCCTTATTCGGAGGATTTCACTTCCTCCTCAAGTCACTGGGAATCTCCCAGCAGAAGGGTG GTTTTAGCCTCACCAGCAAAGTCACTGACGAGGAACAGAGAAAGAGGTACGACAGGGGCATGTTTGAGTTCGGCGCCGCCGCGTCCCCGATCTTCGTGCC CATGACGGCGGCTGCTCTGATCACCTTGCTCTCTTTCGTGGTCGGAGTTTGCAACATTAGTGGGTGGAGATCGGGAGATATGGATGGGTTGCTGATTCAG ATTCTGCTGTCTGGGTTTGGTGTGTTGAACAGCTTCCCGATCTATGAAGCTATGGTTTTGAGGAAGGATCCTGGGAAGTTGCAGGGGAAGACAACTATGG TTGCTGTGTTCTTGTCGATTGTTCTCTGTTCTATTGCTTCTATTTCGTTTTCTCGATTTTAG
AA sequence Show only first row Show all	>Lus10023056 pacid=23170291 polypeptide=Lus10023056 locus=Lus10023056.g ID=Lus10023056.BGIv1.0 annot-version=v1.0 MATSPTNLPPLHQLRPLPHAVINRLFAAVYASAVLALLYRHTTSLLFLHKTSLSVTLLHLTFLISDLVLAFMWLTAQALRIFPVRREQFPANLEKVVPGG EEEFPALDVFICTADPYKEPPLTVVNTALSVMAYEYPTEKLSVYVSDDGGSALTLFAFMEAAKFAAHWLPFCRENDVVDRSPDVYLASSYCSSPETNKIK MMYDEMKEKIEGAVEKGGVDGESLTTDAERRAFNKWNDNNSSFSTNNHPPVLQILLDNKRNKDRAGGFLPSLIYVSREKSTTTHHHFKAGALNVLLRVSA VLTNAPLILTLDCDMLSTNPRTPLHVLCYYFSVGDSFRSSHAFVQFPQRFRGINRDDIYAGDLKNFGTVLPFGFDGLMGPIHMGTCCFFNRRAFFGGPSD SDFVPPEIPQLFPGRMVDKPIHDQDLLGLAHRVARCDYEARTHWGTKMGFRYGTLVEDLYTGFRLQCEGWRSIWCYPESPFFLGDSPTSFADLLIQQSRW QIGLLEISLCQHSPLVFGIKKLGLLLGLGYCHYTLWIVWVLPVTTYAFLPQLALLNGVSIFPKASDPWFLVYAFLFLGAYGQDMLEFLTIDNRGTFRRWW NDQRMWIVRGLSCSLFGGFHFLLKSLGISQQKGGFSLTSKVTDEEQRKRYDRGMFEFGAAASPIFVPMTAAALITLLSFVVGVCNISGWRSGDMDGLLIQ ILLSGFGVLNSFPIYEAMVLRKDPGKLQGKTTMVAVFLSIVLCSIASISFSRF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G23990		ATCSLG3	ARABIDOPSIS THALIANA CELLULOSE...		Lus10023056 [exp]	0	1
AT3G61220		SDR1	short-chain dehydrogenase/redu...		Lus10006894 [exp]	2.0	0.8708
AT5G06900		CYP93D1	"cytochrome P450, family 93, s...		Lus10005878 [exp]	2.4	0.8643
AT3G48460			GDSL-like Lipase/Acylhydrolase...		Lus10034763 [exp]	6.3	0.8380
AT2G46915			Protein of unknown function (D...		Lus10010092 [exp]	6.5	0.8149
AT5G06900		CYP93D1	"cytochrome P450, family 93, s...		Lus10040868 [exp]	7.5	0.8629
AT4G13150			unknown protein		Lus10038175 [exp]	8.1	0.8474
AT5G05580		AtFAD8, SH1, FA...	fatty acid desaturase 8 (.1.2)		Lus10027809 [exp]	8.1	0.8639
AT1G57770			FAD/NAD(P)-binding oxidoreduct...		Lus10037348 [exp]	8.4	0.8384
AT2G45660	MADS	ATSOC1, SOC1, A...	SUPPRESSOR OF OVEREXPRESSION O...		Lus10041385 [exp]	11.5	0.8239
AT1G27950		LTPG1	glycosylphosphatidylinositol-a...		Lus10011358 [exp]	14.5	0.8395

Compare expression of checked genes

Lus10023056 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.