Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23990 736 / 0 ATCSLG3 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE G3, cellulose synthase like G3 (.1) AT4G24010 701 / 0 CSLG2, ATCSLG1 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE LIKE G1, cellulose synthase like G1 (.1) AT4G24000 696 / 0 ATCSLG2 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE LIKE G2, cellulose synthase like G2 (.1) AT1G55850 408 / 6e-132 ATCSLE1 cellulose synthase like E1 (.1) AT4G15290 296 / 3e-89 ATCSLB5, ATCSLB05 CELLULOSE SYNTHASE LIKE 5, Cellulose synthase family protein (.1) AT2G32530 295 / 8e-89 ATCSLB3, ATCSLB03 cellulose synthase-like B3 (.1) AT2G32620 288 / 3e-86 ATCSLB2, ATCSLB02 CELLULOSE SYNTHASE LIKE B2, cellulose synthase-like B (.1) AT2G32540 281 / 1e-83 ATCSLB4, ATCSLB04 CELLULOSE SYNTHASE LIKE B4, cellulose synthase-like B4 (.1) AT2G32610 276 / 5e-82 ATCSLB1, ATCSLB01 CELLULOSE SYNTHASE LIKE B1, cellulose synthase-like B1 (.1) AT4G15320 249 / 3e-71 ATCSLB6, ATCSLB06 CELLULOSE SYNTHASE LIKE B6, cellulose synthase-like B6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032415 [exp] 1278 / 0 AT4G23990 813 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE G3, cellulose synthase like G3 (.1) Lus10003196 [exp] 974 / 0 AT4G23990 815 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE G3, cellulose synthase like G3 (.1) Lus10023056 [exp] 705 / 0 AT4G23990 776 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE G3, cellulose synthase like G3 (.1) Lus10016625 [exp] 430 / 4e-140 AT1G55850 801 / 0.0 cellulose synthase like E1 (.1) Lus10039607 [exp] 223 / 4e-61 AT5G05170 1820 / 0.0 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1) Lus10007296 [exp] 222 / 4e-61 AT4G18780 1671 / 0.0 LEAF WILTING 2, IRREGULAR XYLEM 1, CELLULOSE SYNTHASE 8, cellulose synthase family protein (.1) Lus10029245 [exp] 222 / 5e-61 AT4G18780 1659 / 0.0 LEAF WILTING 2, IRREGULAR XYLEM 1, CELLULOSE SYNTHASE 8, cellulose synthase family protein (.1) Lus10012198 [exp] 216 / 1e-58 AT5G05170 1774 / 0.0 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1) Lus10007538 [exp] 216 / 1e-58 AT5G05170 1772 / 0.0 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G142500 [exp] 884 / 0 AT4G23990 809 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE G3, cellulose synthase like G3 (.1) Potri.003G142400 [exp] 877 / 0 AT4G23990 850 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE G3, cellulose synthase like G3 (.1) Potri.001G369100 [exp] 443 / 2e-145 AT1G55850 887 / 0.0 cellulose synthase like E1 (.1) Potri.006G004300 [exp] 438 / 2e-143 AT1G55850 762 / 0.0 cellulose synthase like E1 (.1) Potri.010G074700 [exp] 426 / 8e-139 AT4G24010 469 / 2e-155 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE LIKE G1, cellulose synthase like G1 (.1) Potri.010G074800 [exp] 405 / 1e-130 AT4G24000 471 / 2e-156 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE LIKE G2, cellulose synthase like G2 (.1) Potri.002G227300 [exp] 338 / 6e-105 AT2G32540 712 / 0.0 CELLULOSE SYNTHASE LIKE B4, cellulose synthase-like B4 (.1) Potri.014G155300 [exp] 314 / 4e-96 AT2G32540 711 / 0.0 CELLULOSE SYNTHASE LIKE B4, cellulose synthase-like B4 (.1) Potri.006G004166 [exp] 252 / 5e-77 AT1G55850 429 / 1e-145 cellulose synthase like E1 (.1) Potri.002G257900 [exp] 226 / 2e-62 AT5G44030 1526 / 0.0 IRREGULAR XYLEM 5, cellulose synthase A4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF03552 [flax] [poplar] Cellulose_synt Cellulose synthase
Representative CDS sequence Show only first row Show all	>Lus10023057 pacid=23170300 polypeptide=Lus10023057 locus=Lus10023057.g ID=Lus10023057.BGIv1.0 annot-version=v1.0 ATGGAGGCTAACGGAACCACCGGCCGTCTTAGCCCCGTCGCCCTCCACAAGGCGGAGCCGTGGCCGATCACCACCTTCAACCGCCTCTTCGCGCCGATCT ACCTACTCGCCGGCCTAGCTCTCTTCTACCACCACATAACAAACCTCCGATATTCCACGTCATCCTCTTCCTCTTTCCTCATCACGCTGGCCTTGCTCCT CGCTGACGTGGCACTCGCCTTCATGTGGGCCGCCACCCAGGTGTTCCGGATGAACCCGATACGACGCCGTGAGACGCTGCGGAACTTGAACGGCGTCGTT TCTAGGGAGGACCTGCCCGGGCTGGACGTGTTCATCTGCACGGCGGACCCGTACAAGGAGCCGCCGATCGGGGTGGTGAACACGGCGCTGTCGGTACTGG CTTACGACTATCCCAAGGACAAGCTGGCGGTGTATGTCTCCGACGACGGAGGGTCCCAGTTGACGCTCTTTGCGTTCATGGAGGCGGCGAAGTTTGCGGC GGTGTGGCTGCCGTTTTGTGAGAGGAACCGGGTTGTGGAGCGGAACCCGGCGGCTTATTTCGAATCCGGTGATTTTGGTTCTTCGTCCGGTGAGGCTGAG GAAATTAAGAACATGTACGAGAGCATGAAGGTGAAGGTGGAACATGTTGTGGAGAGAGGCAAAGTGGATGATAAGTACATCAACGGTCCCAAAGAAAACG AAGCTTTCGGCAAATGGACTCCCGAATTCACAAAGCAAGACCATCCTTCAGTCATTCAGGTATTGGTGGAGAGCAAGAAAGACAAGGACGTGGATGGGCA AATAATGCCAAATCTCATTTACCTCTCGAGGCAGAAAAGCAAGTCTTCTCCACATCACTTCAAAGCTGGCGCCCTCAATGTTTTGCTACGTGTGTCAGCT GCTATGACCAACGCCCCAATAATACTGACCTTGGACTGCGACATGTACTCCAATGATCCCGCTACACCACTTCGCACCATGTGCTACTTCTGCGACCCGA AACTCGGACCCGAAAACTCGGCTTACGTTCAGTTCCCTCAGAAGTACCGAGGGATCAATAAGAACGACATCTATGCCGGTGAATATGCACGGTTGTTTGT GATTCAAGCTATGGGTTTCGATGGACTGTGCGGTCCTAACCATGTTGGAACCGGCTGCTTTTTTCGTCGGAGAGTCTTCTTTGGCGGGCCGTCTAATCCG GTGCCGGTTGAGATTCCTGAGCTGGAGCCTGCCTATGTTGTGAAAGATTCGGTTCAGTCGGGTTCAGTTCTGGGTTTGGCTCGTGAGGTTTCGAGTTGTG ACTATGAGAATCAAACCGGCTGGGGTTCAAAAATTGGGTTCAGGTATGGGTCGTTGGTGGAAGATTACTACACAGGATACAGGCTACACTGTGAAGGATG GAGATCAGTCTTCTGCTGTCCAGATAGACCCGCGTTTCTCGGGGATGCTCCCATCTCATTGGTGGATATGATAAATCAGCAGAAAAGATGGGACATTGGG CTTCTTGAGGTGGCCTTTTGTAAATTCAGCACTCTGACCCACGGAGTTAAGCGGGCCGGATTTCTTGTGGGCTTAGGTTACTCTCAGTATGCATTCTGGC CCGTTTGGTCCATCCCACTCCTCGTTTACTCCTTCATTCCCCAGCTCGCTCTCCTCAATAATGTCCACATCTTCCCAAAGGCAACAGAGCCATGGTTTTG GCTATACCCATTCCTCTTCCTAGGAGCATACACACAAGACCTACTAGACTTCCTCATCGTCGGCGGCACCATCCCCAAATGGTGGAGCGACCAAAGAATC TGGCTCCTACGCGGGCTGACGTGTCACCTCTTCGGCTCAGTCGAGTACTTCCTCAAATTTCTAGGCATAGCCGCCGGATTCAACGTGACCAGCAAAGTAG TGGACGAGGAACAGAGCAAGAGATACGACCAGGGGATCTTCGAGTTCGGGGTCCATTCCCCGATGTTCGTTCCCCCCACCGCGGCGGCGCTGATCAACTT GCTGGCGCTCCTCCACGGTGTGGTTACTACCCTCATTGTTCGCCGCGCCGGTGTGGTGGACGCGCCGGTGGTGCAGCTGGTGGTGGCAGGGTTTGGGGCG GTGAACTGTTGGCCGATTTATGAAGCTGTTGGTTTGAGGAGTGACAAGGGTAGAATGCCTGTGAAGACCACGGTTCTGTCGGTGGTGTTGGCTTTGGCTT GCTACGTTGTTGCTCCATTTGTTCTCAAATGA
AA sequence Show only first row Show all	>Lus10023057 pacid=23170300 polypeptide=Lus10023057 locus=Lus10023057.g ID=Lus10023057.BGIv1.0 annot-version=v1.0 MEANGTTGRLSPVALHKAEPWPITTFNRLFAPIYLLAGLALFYHHITNLRYSTSSSSSFLITLALLLADVALAFMWAATQVFRMNPIRRRETLRNLNGVV SREDLPGLDVFICTADPYKEPPIGVVNTALSVLAYDYPKDKLAVYVSDDGGSQLTLFAFMEAAKFAAVWLPFCERNRVVERNPAAYFESGDFGSSSGEAE EIKNMYESMKVKVEHVVERGKVDDKYINGPKENEAFGKWTPEFTKQDHPSVIQVLVESKKDKDVDGQIMPNLIYLSRQKSKSSPHHFKAGALNVLLRVSA AMTNAPIILTLDCDMYSNDPATPLRTMCYFCDPKLGPENSAYVQFPQKYRGINKNDIYAGEYARLFVIQAMGFDGLCGPNHVGTGCFFRRRVFFGGPSNP VPVEIPELEPAYVVKDSVQSGSVLGLAREVSSCDYENQTGWGSKIGFRYGSLVEDYYTGYRLHCEGWRSVFCCPDRPAFLGDAPISLVDMINQQKRWDIG LLEVAFCKFSTLTHGVKRAGFLVGLGYSQYAFWPVWSIPLLVYSFIPQLALLNNVHIFPKATEPWFWLYPFLFLGAYTQDLLDFLIVGGTIPKWWSDQRI WLLRGLTCHLFGSVEYFLKFLGIAAGFNVTSKVVDEEQSKRYDQGIFEFGVHSPMFVPPTAAALINLLALLHGVVTTLIVRRAGVVDAPVVQLVVAGFGA VNCWPIYEAVGLRSDKGRMPVKTTVLSVVLALACYVVAPFVLK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G23990		ATCSLG3	ARABIDOPSIS THALIANA CELLULOSE...		Lus10023057 [exp]	0	1
AT2G35940	HD	BLH1, EDA29	embryo sac development arrest ...		Lus10013579 [exp]	1.4	0.8453
AT3G01470	HD	HD-ZIP-1, HAT5,...	HOMEODOMAIN PROTEIN FROM ARABI...		Lus10037218 [exp]	1.4	0.8378
AT5G42800		M318, TT3, DFR	dihydroflavonol 4-reductase (....		Lus10023096 [exp]	4.0	0.7907
AT4G21120		CAT1, AAT1	CATIONIC AMINO ACID TRANSPORTE...		Lus10001581 [exp]	6.2	0.7954
AT1G28220		ATPUP3	purine permease 3 (.1)		Lus10020950 [exp]	6.2	0.7432
AT1G69640		SBH1	sphingoid base hydroxylase 1 (...		Lus10037183 [exp]	14.1	0.7513
AT5G59050			unknown protein		Lus10001433 [exp]	14.3	0.7716
AT1G64940		CYP89A6	"cytochrome P450, family 87, s...		Lus10002138 [exp]	18.7	0.7609
AT5G45820		PKS18, CIPK20, ...	SNF1-RELATED PROTEIN KINASE 3....		Lus10034212 [exp]	19.1	0.7399
AT3G20300			Protein of unknown function (D...		Lus10033919 [exp]	20.2	0.7099

Compare expression of checked genes

Lus10023057 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.