Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23980 722 / 0 ARF ARF9 auxin response factor 9 (.1.2) AT2G46530 664 / 0 ARF ARF11 auxin response factor 11 (.1.2.3) AT3G61830 651 / 0 ARF ARF18 auxin response factor 18 (.1) AT1G59750 609 / 0 ARF ARF1 auxin response factor 1 (.1.2.3.4) AT1G35540 545 / 0 ARF ARF14 auxin response factor 14 (.1) AT1G34410 535 / 0 ARF ARF21 auxin response factor 21 (.1) AT1G34310 528 / 0 ARF ARF12 auxin response factor 12 (.1) AT1G34390 525 / 2e-180 ARF ARF22 auxin response factor 22 (.1) AT1G35520 521 / 1e-178 ARF ARF15 auxin response factor 15 (.1) AT1G35240 514 / 6e-176 ARF ARF20 auxin response factor 20 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032413 [exp] 628 / 0 AT4G23980 486 / 8e-170 auxin response factor 9 (.1.2) Lus10007440 [exp] 623 / 0 AT1G59750 917 / 0.0 auxin response factor 1 (.1.2.3.4) Lus10024455 [exp] 618 / 0 AT1G59750 905 / 0.0 auxin response factor 1 (.1.2.3.4) Lus10032541 [exp] 505 / 6e-169 AT5G62000 1095 / 0.0 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) Lus10043200 [exp] 504 / 8e-169 AT5G62000 1091 / 0.0 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) Lus10032414 [exp] 447 / 8e-155 AT4G23980 174 / 3e-50 auxin response factor 9 (.1.2) Lus10030240 [exp] 397 / 9e-132 AT2G46530 381 / 1e-126 auxin response factor 11 (.1.2.3) Lus10041340 [exp] 381 / 9e-126 AT3G61830 370 / 2e-122 auxin response factor 18 (.1) Lus10033598 [exp] 359 / 1e-113 AT5G37020 799 / 0.0 auxin response factor 8 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G142100 [exp] 953 / 0 AT4G23980 706 / 0.0 auxin response factor 9 (.1.2) Potri.001G088600 [exp] 937 / 0 AT4G23980 710 / 0.0 auxin response factor 9 (.1.2) Potri.014G100100 [exp] 738 / 0 AT4G23980 694 / 0.0 auxin response factor 9 (.1.2) Potri.002G172800 [exp] 726 / 0 AT4G23980 662 / 0.0 auxin response factor 9 (.1.2) Potri.004G228800 [exp] 622 / 0 AT1G59750 906 / 0.0 auxin response factor 1 (.1.2.3.4) Potri.003G001000 [exp] 618 / 0 AT1G59750 898 / 0.0 auxin response factor 1 (.1.2.3.4) Potri.012G106100 [exp] 507 / 8e-170 AT5G62000 1035 / 0.0 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) Potri.015G105300 [exp] 495 / 4e-165 AT5G62000 1065 / 0.0 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) Potri.003G163600 [exp] 471 / 1e-156 AT5G62000 691 / 0.0 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) Potri.001G066200 [exp] 443 / 7e-146 AT5G62000 765 / 0.0 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [flax] [poplar] Ubiquitin PF02309 [flax] [poplar] AUX_IAA AUX/IAA family CL0072 [flax] [poplar] PF06507 [flax] [poplar] Auxin_resp Auxin response factor CL0405 [flax] [poplar] DNA_b-psBarrel PF02362 [flax] [poplar] B3 B3 DNA binding domain
Representative CDS sequence Show only first row Show all	>Lus10023058 pacid=23170330 polypeptide=Lus10023058 locus=Lus10023058.g ID=Lus10023058.BGIv1.0 annot-version=v1.0 ATGGCGGCAAATCAAGGAGGTGGGAAGGATGATCTGTATACAGAGCTATGGAAGCTATGTGCAGGTCCAGTTGTTGAAGTACCAAAATCAAATGAAAGGG TTTACTATTTCCCTCAAGGACACATGGAGCAGTTGGAGGCTTCCACAAATCAGGAACTGAATCAGAGAGCTCCTTTGTTCAATTTGCCGTCCAAGATTCT CTGTCGGGTCATTAACATCCTTCTTCTGGCTGAACCAGAGACTGATGAAGTTTATGCACAGATAACTTTGATACCTGAACTTGATCAAAGTGAGCCAACC AGTCCCGATCTGTGCCCAACCGAGACTCCAAGGCCTTCGGTTCATTCGTTTTGTAAGGTCTTGACAGCATCGGATACAAGCACTCATGGTGGCTTTTCCG TGCTTCGCAAACATGCAACTGAATGCCTTCCTCCTTTGGACATGACTCAGCAAACTCCAACTCAGGAATTGGTAGCAAAAGATCTTCATGGATACGAGTG GAGGTTCAAGCATATCTTCCGAGGTCAGCCTCGGAGACACTTGCTTACAACAGGCTGGAGTACGTTTGTGACATCCAAGAGATTAGTTGCTGGCGATTCG TTTGTTTTCCTCAGGGGAGAGACTGGAGACCTCCGAGTCGGAGTGAGACGGGTAGCTCGTCAACAAAGCAGCATGCCTACCTCTGTTATTTCTAGTCAGA GCATGCACCTAGGAGTTTTGGCAACAGCTTCTCATGCCGTTGGGACTCAAACTATGTTTGTGGTCTATTATAAGCCAAGGACTAGCCAGTTCATCATTGG CCTGAACAGGTATTTGGAAGCAGTTGGTAATAAGTTTGCTGTCGGGAAGAGATTCAAGATGAGGTTTGAAGGCGAAGATTCCCCTGAGCGAAGGTTCTCT GGAACTATTGTTGGTGTTGACGATTTCTCACCTTATTGGGCGGAGTCCAAATGGCGATGCTTGAAGGTTCAATGGGATGAACCTGCATCCATTCCAAGAC CAGACAAGGTTTCACCATGGGAGATAGAACCATTTGTGGCTTCTGTACAGGCAAACCTGCCTCAACCAGCTCCAATGAAGAACAAAAGGCCACGTCCTCC AAATGAAATTCCAGCTCTAGATTTGTCCTCAACTGCATCCACCTGGAATTCTGGACTAACCCAGACCCACGAATTGACACGAATCAGCGTTACTGCCGAG GGCAGAAGAAATGAGAACGTCATGATGTGGCAACATAAGCAGGCCGATATTATCAGCCATGGTAGCTCTATTTCGAGAACTCAGACCGATGCAGGCTGGC TATCTCCGCACATGAATGTCAATCAGCATAACTTCCAGGACACCATTGAGGATACCAAGAGCGTCTCGAATTGGCCAGTCACGAACTTTTCATCTCCCCG AGCTGCAAAACCGAAGAGTGAAGTTGCCAGTAGCTACAGGTTGTTTGGTATTGAGCTCATGAATAGTCCGATGAGCGCACCGATGAACGAGAAGACATTA TCTAGTGGCACAACAGAAGTACAAGTAAATAGTACCATCTCAGCTGCTGATCCTGACCAAAAACCAGACTCTCCCAAGGAAAAGAAAACCGACCAATCTC AAGTGTCGCCTAAGGATACTCAGAGCAGGCAGAGTTCTTTATCCACCAGAAGCCGCACCAAGGGATTTGCTGTTGGAAGAGCGGTAGACCTGACCACAAT AAAAGGGTATCCTCAGCTGATAAGTGAGCTGGAGCGTTTGTTTGATATCCAGGGACAGCTTCAGTTTCGCGACAAGTGGGAAATCGTCTACACTGACGAC GAAGGAGACATGATGCTCGTCGGAGATGATCCATGGGCTGAATTCTGCAACATGGTGAGGAGAATCATCATATGTTCGAGTCAGGATGTGAAAAGGATGA GGAATCCAGGGAGCAAGAATCCCATGTTGGGAGTAGAAGGAGGAGATGGAGGAGCAGCTATAGCAGTAAGCTCAGATTCGGCAGTGGAAAACTCCAAACA GTAG
AA sequence Show only first row Show all	>Lus10023058 pacid=23170330 polypeptide=Lus10023058 locus=Lus10023058.g ID=Lus10023058.BGIv1.0 annot-version=v1.0 MAANQGGGKDDLYTELWKLCAGPVVEVPKSNERVYYFPQGHMEQLEASTNQELNQRAPLFNLPSKILCRVINILLLAEPETDEVYAQITLIPELDQSEPT SPDLCPTETPRPSVHSFCKVLTASDTSTHGGFSVLRKHATECLPPLDMTQQTPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDS FVFLRGETGDLRVGVRRVARQQSSMPTSVISSQSMHLGVLATASHAVGTQTMFVVYYKPRTSQFIIGLNRYLEAVGNKFAVGKRFKMRFEGEDSPERRFS GTIVGVDDFSPYWAESKWRCLKVQWDEPASIPRPDKVSPWEIEPFVASVQANLPQPAPMKNKRPRPPNEIPALDLSSTASTWNSGLTQTHELTRISVTAE GRRNENVMMWQHKQADIISHGSSISRTQTDAGWLSPHMNVNQHNFQDTIEDTKSVSNWPVTNFSSPRAAKPKSEVASSYRLFGIELMNSPMSAPMNEKTL SSGTTEVQVNSTISAADPDQKPDSPKEKKTDQSQVSPKDTQSRQSSLSTRSRTKGFAVGRAVDLTTIKGYPQLISELERLFDIQGQLQFRDKWEIVYTDD EGDMMLVGDDPWAEFCNMVRRIIICSSQDVKRMRNPGSKNPMLGVEGGDGGAAIAVSSDSAVENSKQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G23980	ARF	ARF9	auxin response factor 9 (.1.2)		Lus10023058 [exp]	0	1
AT1G71110			unknown protein		Lus10013492 [exp]	7.9	0.8561
AT5G47860			Protein of unknown function (D...		Lus10008591 [exp]	12.3	0.8552
AT1G13750			Purple acid phosphatases super...		Lus10036903 [exp]	15.7	0.7963
AT3G21700		ATSGP2	Ras-related small GTP-binding ...		Lus10039670 [exp]	16.2	0.8294
AT5G53350		CLPX	CLP protease regulatory subuni...		Lus10036701 [exp]	19.1	0.8431
AT5G01800			saposin B domain-containing pr...		Lus10022750 [exp]	19.6	0.8303
AT4G31410			Protein of unknown function (D...		Lus10026950 [exp]	20.1	0.8377
AT3G24490	Trihelix		Alcohol dehydrogenase transcri...		Lus10035893 [exp]	25.5	0.8366
AT1G14740			Protein of unknown function (D...		Lus10013248 [exp]	26.9	0.7980
AT3G12810		CHR13, SRCAP, P...	PHOTOPERIOD-INDEPENDENT EARLY ...		Lus10002973 [exp]	28.4	0.7343

Compare expression of checked genes

Lus10023058 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.