Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42050 285 / 3e-94 DCD (Development and Cell Death) domain protein (.1) AT3G27090 273 / 2e-90 DCD (Development and Cell Death) domain protein (.1) AT5G01660 103 / 4e-24 unknown protein AT3G11000 101 / 1e-23 DCD (Development and Cell Death) domain protein (.1), DCD (Development and Cell Death) domain protein (.2) AT5G61910 96 / 2e-21 DCD (Development and Cell Death) domain protein (.1), DCD (Development and Cell Death) domain protein (.2), DCD (Development and Cell Death) domain protein (.3), DCD (Development and Cell Death) domain protein (.4) AT2G35140 87 / 3e-18 DCD (Development and Cell Death) domain protein (.1), DCD (Development and Cell Death) domain protein (.2), DCD (Development and Cell Death) domain protein (.3) AT2G32910 84 / 1e-17 DCD (Development and Cell Death) domain protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032412 [exp] 432 / 3e-152 AT5G42050 359 / 1e-123 DCD (Development and Cell Death) domain protein (.1) Lus10041557 [exp] 275 / 7e-91 AT3G27090 428 / 2e-152 DCD (Development and Cell Death) domain protein (.1) Lus10012533 [exp] 273 / 3e-90 AT3G27090 432 / 5e-154 DCD (Development and Cell Death) domain protein (.1) Lus10012220 [exp] 117 / 2e-29 AT5G01660 224 / 1e-66 unknown protein Lus10018307 [exp] 110 / 3e-26 AT5G01660 276 / 3e-82 unknown protein Lus10017137 [exp] 88 / 2e-18 AT4G19900 693 / 0.0 alpha 1,4-glycosyltransferase family protein (.1) Lus10018316 [exp] 84 / 2e-17 AT2G35140 185 / 3e-48 DCD (Development and Cell Death) domain protein (.1), DCD (Development and Cell Death) domain protein (.2), DCD (Development and Cell Death) domain protein (.3) Lus10032534 [exp] 80 / 3e-16 AT5G61910 169 / 3e-45 DCD (Development and Cell Death) domain protein (.1), DCD (Development and Cell Death) domain protein (.2), DCD (Development and Cell Death) domain protein (.3), DCD (Development and Cell Death) domain protein (.4) Lus10001728 [exp] 71 / 4e-13 AT2G32910 208 / 1e-57 DCD (Development and Cell Death) domain protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G088800 [exp] 296 / 3e-98 AT5G42050 289 / 2e-95 DCD (Development and Cell Death) domain protein (.1) Potri.003G141900 [exp] 295 / 7e-98 AT5G42050 285 / 4e-94 DCD (Development and Cell Death) domain protein (.1) Potri.017G069100 [exp] 275 / 5e-91 AT3G27090 426 / 1e-151 DCD (Development and Cell Death) domain protein (.1) Potri.001G330300 [exp] 272 / 6e-90 AT3G27090 424 / 6e-151 DCD (Development and Cell Death) domain protein (.1) Potri.019G066100 [exp] 246 / 3e-80 AT3G27090 251 / 2e-83 DCD (Development and Cell Death) domain protein (.1) Potri.016G127600 [exp] 115 / 4e-28 AT5G01660 628 / 0.0 unknown protein Potri.008G074200 [exp] 113 / 3e-27 AT5G01660 488 / 2e-164 unknown protein Potri.001G136300 [exp] 94 / 2e-21 AT5G61910 180 / 2e-50 DCD (Development and Cell Death) domain protein (.1), DCD (Development and Cell Death) domain protein (.2), DCD (Development and Cell Death) domain protein (.3), DCD (Development and Cell Death) domain protein (.4) Potri.015G122300 [exp] 89 / 7e-19 AT2G35140 211 / 4e-56 DCD (Development and Cell Death) domain protein (.1), DCD (Development and Cell Death) domain protein (.2), DCD (Development and Cell Death) domain protein (.3) Potri.005G043100 [exp] 79 / 6e-16 AT2G32910 201 / 6e-56 DCD (Development and Cell Death) domain protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10539 [flax] [poplar] Dev_Cell_Death Development and cell death domain
Representative CDS sequence Show only first row Show all	>Lus10023059 pacid=23170318 polypeptide=Lus10023059 locus=Lus10023059.g ID=Lus10023059.BGIv1.0 annot-version=v1.0 ATGGATAACAACAACAATCAGCAGTCGTCGTTCTACCAGTTCAGCGACCAGCTAAGGCTGCACAACTCCAACTTGGCTAACCTTTCTCTCAACGACTCGA TCTGGAGCAGCAGCAGCAACACCAACAACAATCCTTACGGATCCTCCAAGCGACCCGATGAGCGCCGCAACTTCGACATCCGGGTCGGAGCCGAGCTCAA CTCCCCCGCCCCCAAGATCGGGTCCGATTGGAACGGGTTCAACGACGGATGGAAGGTCGGAGTCGGGTCGCCTGCTGGGTCGATGATGAATAACAACAAC AATAACATGACCAGCAGTTTCCCTGGTTTGTTGAACAACAGCAACAGTTCGTCCGTGATGGGTGGATCTCATCAGATGAACGTGGGGCTGAACGGCGGGT TCAACAAGGGAATCTACTCGAAAGGCGGTGGGCTGGTGAACAACGGCGGCGGAGGGTTCAATTTTAATGTGAATCCGAGGATGGGGAAGAACGGGAAGGG AATCGGCGGCGACGATGACCATCAATTCGGCAAAGTCGGGAAGAAGAACAGCGGAAAGAAAGGCAACGACAGCAACGATAACGGGAAAGACGGGAAACAG AATGTTGTTGATAAGAGGTTCAAGACGCTTCCGGCGACGGAGGCTTTGCCGAGGAATGAGACGATCGGAGGGTATATCTTTGTCTGTAACAACGATACCA TGGCTGAGAATCTCAGGCGGCAGCTGTTTGGTTTGCCGCCGAGGTATAGGGATTCGGTGAGGGCCATTACTCCAGGATTGCCGCTTTTCCTTTACAACTA CTCCACCCACCAGCTCCATGGAGTTTTCGAGGCAGCGAGCTTCGGAGGGACGAACATCGATCCAGCAGCGTGGGAGGACAAGAAATGCGCAGGGGAATCA AGGTTCCCTGCTCAGGTTAAAGTGGTGACCAGGAAAATATGTGAGCCACTGGAAGAGGATTCATTCAGGCCTATCCTCCATCACTACGATGGCCCTAAGT TCCGACTGGAGCTCAATGTGCCCGAGGCTCTGTCACTCTTGGACATATTTGATGACCAGAAGGCTTGA
AA sequence Show only first row Show all	>Lus10023059 pacid=23170318 polypeptide=Lus10023059 locus=Lus10023059.g ID=Lus10023059.BGIv1.0 annot-version=v1.0 MDNNNNQQSSFYQFSDQLRLHNSNLANLSLNDSIWSSSSNTNNNPYGSSKRPDERRNFDIRVGAELNSPAPKIGSDWNGFNDGWKVGVGSPAGSMMNNNN NNMTSSFPGLLNNSNSSSVMGGSHQMNVGLNGGFNKGIYSKGGGLVNNGGGGFNFNVNPRMGKNGKGIGGDDDHQFGKVGKKNSGKKGNDSNDNGKDGKQ NVVDKRFKTLPATEALPRNETIGGYIFVCNNDTMAENLRRQLFGLPPRYRDSVRAITPGLPLFLYNYSTHQLHGVFEAASFGGTNIDPAAWEDKKCAGES RFPAQVKVVTRKICEPLEEDSFRPILHHYDGPKFRLELNVPEALSLLDIFDDQKA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G42050			DCD (Development and Cell Deat...		Lus10023059 [exp]	0	1
AT2G38360		PRA1.B4	prenylated RAB acceptor 1.B4 (...		Lus10012224 [exp]	1.7	0.8948
AT1G13360			unknown protein		Lus10034310 [exp]	2.0	0.8893
AT3G57450			unknown protein		Lus10042063 [exp]	2.2	0.8784
AT1G34300			lectin protein kinase family p...		Lus10013252 [exp]	2.4	0.8883
AT2G38360		PRA1.B4	prenylated RAB acceptor 1.B4 (...		Lus10002853 [exp]	4.0	0.8794
AT2G36320			A20/AN1-like zinc finger famil...		Lus10020594 [exp]	4.2	0.8686
AT4G17500	AP2_ERF	ATERF-1, AtERF1	ethylene responsive element bi...		Lus10040165 [exp]	4.2	0.8782
AT2G27080			Late embryogenesis abundant (L...		Lus10026762 [exp]	7.0	0.8734
AT3G62260			Protein phosphatase 2C family ...		Lus10009993 [exp]	7.5	0.8327
AT4G25030			unknown protein		Lus10041415 [exp]	8.1	0.8496

Compare expression of checked genes

Lus10023059 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.