Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61920 67 / 9e-14 unknown protein AT4G10910 49 / 2e-07 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032411 [exp] 353 / 5e-126 AT3G61920 73 / 4e-16 unknown protein Lus10003193 [exp] 142 / 6e-43 AT3G61920 67 / 4e-14 unknown protein Lus10008274 [exp] 51 / 1e-07 AT1G64700 118 / 9e-33 unknown protein Lus10030204 [exp] 41 / 0.0002 AT3G61920 59 / 4e-11 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G089000 [exp] 133 / 3e-39 AT3G61920 81 / 5e-19 unknown protein Potri.002G178900 [exp] 57 / 7e-10 AT3G61920 142 / 6e-43 unknown protein Potri.014G104900 [exp] 56 / 1e-09 AT3G61920 130 / 4e-38 unknown protein Potri.011G153000 [exp] 52 / 3e-08 AT1G64700 160 / 1e-49 unknown protein Potri.001G448500 [exp] 46 / 4e-06 AT1G64700 154 / 3e-47 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10023060 pacid=23170378 polypeptide=Lus10023060 locus=Lus10023060.g ID=Lus10023060.BGIv1.0 annot-version=v1.0 ATGGGGAATTGCAGTCCTAGAGGGATCACAGCAGCAGCCACCGCCGATGACGAACAAAGCTCCAATCTTCCCATCCGGGTCCGGACCGATTCAGGCGAGA TCCTTGAGTTCAACTCTCCTAAGCTAGCTAGAGATCTCATCAATGAGTATCCTGGCTTCAACATTCACAGAGAAATTCAGACTAAAGGATCATCATCATC ATCATCATCACCATCCATGCCTGTTTCTCACTGTGAGTACTTGGTTGCCGGCCAGTTCTACTGCCTTCTCCCAGTTCCTGCCAAGGTGGAAAAAGCTTCA CCTCTAATTGACGTCGTTTCCAGCAATGGGGAGGAAGGAGGTAAGAAGAATGATGGGTCGGCGGCACTCCATGTGTTGCCGTCGCACAGAGAAGGGGTGT GGAAAGTGAAGCTTGTGATAGACACCAAGCGGCTGGGGGAGATTTGGTCGGAGCAGGAGAATGTCGAGGCTTTGATCGAGAAGATGAGGATGGCTGCTGC TGTATCGGAGAGCTTGACTCCGCGGCGGAGCAGGAGTTCTTGGGGGCTGACTAGGAAGCCTGCTGCTGCTCTTTCTCACCTGCTTACTCTGCCCAACTGA
AA sequence Show only first row Show all	>Lus10023060 pacid=23170378 polypeptide=Lus10023060 locus=Lus10023060.g ID=Lus10023060.BGIv1.0 annot-version=v1.0 MGNCSPRGITAAATADDEQSSNLPIRVRTDSGEILEFNSPKLARDLINEYPGFNIHREIQTKGSSSSSSSPSMPVSHCEYLVAGQFYCLLPVPAKVEKAS PLIDVVSSNGEEGGKKNDGSAALHVLPSHREGVWKVKLVIDTKRLGEIWSEQENVEALIEKMRMAAAVSESLTPRRSRSSWGLTRKPAAALSHLLTLPN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G61920			unknown protein		Lus10023060 [exp]	0	1
AT5G13870		EXGT-A4, XTH5, ...	endoxyloglucan transferase A4,...		Lus10011052 [exp]	2.0	0.9822
AT3G01840			Protein kinase superfamily pro...		Lus10041574 [exp]	4.0	0.9659
AT3G61920			unknown protein		Lus10032411 [exp]	4.4	0.9582
AT5G57090		MM31, ATPIN2, A...	WAVY ROOTS 6, ETHYLENE INSENSI...		Lus10001429 [exp]	5.1	0.9739
AT4G12520			Bifunctional inhibitor/lipid-t...		Lus10032254 [exp]	5.5	0.9723
AT5G57090		MM31, ATPIN2, A...	WAVY ROOTS 6, ETHYLENE INSENSI...		Lus10001637 [exp]	6.2	0.9735
					Lus10032253 [exp]	6.3	0.9725
AT2G01830		CRE1, AHK4, WOL...	WOODEN LEG 1, WOODEN LEG, CYTO...		Lus10028992 [exp]	6.5	0.9700
AT3G19850			Phototropic-responsive NPH3 fa...		Lus10012901 [exp]	10.2	0.9678
AT2G44380			Cysteine/Histidine-rich C1 dom...		Lus10003919 [exp]	10.8	0.9622

Compare expression of checked genes

Lus10023060 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.