Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G10920 116 / 2e-33 KELP transcriptional coactivator p15 (PC4) family protein (KELP) (.1), transcriptional coactivator p15 (PC4) family protein (KELP) (.2) AT5G09250 57 / 2e-11 KIWI ssDNA-binding transcriptional regulator (.1.2) AT4G00980 56 / 2e-09 zinc knuckle (CCHC-type) family protein (.1) AT5G09240 46 / 9e-07 ssDNA-binding transcriptional regulator (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032410 [exp] 201 / 9e-67 AT4G10920 169 / 2e-54 transcriptional coactivator p15 (PC4) family protein (KELP) (.1), transcriptional coactivator p15 (PC4) family protein (KELP) (.2) Lus10030245 [exp] 82 / 3e-20 AT4G10920 136 / 3e-41 transcriptional coactivator p15 (PC4) family protein (KELP) (.1), transcriptional coactivator p15 (PC4) family protein (KELP) (.2) Lus10003998 [exp] 69 / 4e-14 AT4G00980 226 / 9e-68 zinc knuckle (CCHC-type) family protein (.1) Lus10013733 [exp] 57 / 3e-11 AT5G09250 139 / 2e-44 ssDNA-binding transcriptional regulator (.1.2) Lus10039207 [exp] 57 / 7e-11 AT5G09250 125 / 1e-38 ssDNA-binding transcriptional regulator (.1.2) Lus10032409 [exp] 45 / 1e-06 AT5G42060 58 / 2e-12 DEK, chromatin associated protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G089400 [exp] 135 / 3e-41 AT4G10920 152 / 5e-48 transcriptional coactivator p15 (PC4) family protein (KELP) (.1), transcriptional coactivator p15 (PC4) family protein (KELP) (.2) Potri.002G171900 [exp] 76 / 2e-16 AT4G00980 373 / 7e-125 zinc knuckle (CCHC-type) family protein (.1) Potri.007G101100 [exp] 55 / 3e-10 AT5G09250 115 / 7e-35 ssDNA-binding transcriptional regulator (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08766 [flax] [poplar] DEK_C DEK C terminal domain CL0609 [flax] [poplar] sPC4_like PF02229 [flax] [poplar] PC4 Transcriptional Coactivator p15 (PC4)
Representative CDS sequence Show only first row Show all	>Lus10023061 pacid=23170288 polypeptide=Lus10023061 locus=Lus10023061.g ID=Lus10023061.BGIv1.0 annot-version=v1.0 ATGGATTCCAAAACGAAGATCGACATCGAGAAAAGCGTACGCAGAATCATCGATGAATCCGACATGACCTCCACTACGGAGTCCCAGATTCGCAAGAGGG CATCCCAGGAGCTGGGACTCGACCTCAATAAACCAGAGTTCAAGGCCTATGTCAGGCATGTCGTCAACAAATTTCTACAGGAAGCTGCTGAAAAGGAGCA GGAAAAGGAAGAAGCAGAAGCTGATGATGGGGGTGAAGGTCAACAAGCTGCTGGTGGCGTGGAGTATGACGATGATGGTGATCTCATCATTTGCAGGTTG ACGTCCAAGAGAAGGGTGACGATTCAGAATTTCAGAGGGAGGAACTTGGTGTCGATAAGGGAGTTCTACAGTAAAGATGGGAAAGAACTTCCAACTTCCA AAGGTAGCTTCAAGCTTGATGTTTTTATCGTTTTATTGTCACTAGTCGTTCAGAAAAGGGATAATATTGATAAGGTGTCTACTGTCCAGTGTCCTAAGTG A
AA sequence Show only first row Show all	>Lus10023061 pacid=23170288 polypeptide=Lus10023061 locus=Lus10023061.g ID=Lus10023061.BGIv1.0 annot-version=v1.0 MDSKTKIDIEKSVRRIIDESDMTSTTESQIRKRASQELGLDLNKPEFKAYVRHVVNKFLQEAAEKEQEKEEAEADDGGEGQQAAGGVEYDDDGDLIICRL TSKRRVTIQNFRGRNLVSIREFYSKDGKELPTSKGSFKLDVFIVLLSLVVQKRDNIDKVSTVQCPK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G10920		KELP	transcriptional coactivator p1...		Lus10023061 [exp]	0	1
AT4G22310			Uncharacterised protein family...		Lus10011790 [exp]	1.4	0.9360
AT5G55810		ATNMNAT	nicotinate/nicotinamide mononu...		Lus10023862 [exp]	2.0	0.9338
AT2G43190			ribonuclease P family protein ...		Lus10026483 [exp]	2.0	0.9278
AT5G53530		VPS26A	vacuolar protein sorting 26A (...		Lus10037421 [exp]	2.4	0.9244
AT2G23940			Protein of unknown function (D...		Lus10028450 [exp]	3.3	0.9143
AT4G20330			Transcription initiation facto...		Lus10002233 [exp]	3.7	0.9228
AT4G04740		CPK23, ATCPK23	calcium-dependent protein kina...		Lus10022624 [exp]	3.9	0.9293
AT5G27830			unknown protein		Lus10020660 [exp]	4.9	0.9023
AT3G61113			Ubiquitin related modifier 1 (...		Lus10041378 [exp]	5.7	0.9228
AT5G63080			2-oxoglutarate (2OG) and Fe(II...		Lus10001249 [exp]	6.3	0.9179

Compare expression of checked genes

Lus10023061 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.