Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02210 67 / 4e-12 unknown protein AT2G24960 55 / 3e-08 unknown protein AT1G30140 48 / 3e-06 unknown protein AT5G27260 43 / 0.0002 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032996 [exp] 600 / 0 AT4G02210 49 / 2e-06 unknown protein Lus10011599 [exp] 226 / 3e-75 AT4G02210 54 / 1e-09 unknown protein Lus10018740 [exp] 226 / 3e-75 AT4G02210 58 / 5e-11 unknown protein Lus10010798 [exp] 181 / 7e-53 AT5G27260 61 / 5e-10 unknown protein Lus10034954 [exp] 169 / 3e-51 ND / Lus10004397 [exp] 160 / 1e-46 AT5G27260 77 / 6e-16 unknown protein Lus10022379 [exp] 160 / 2e-46 AT5G27260 74 / 1e-14 unknown protein Lus10008445 [exp] 150 / 9e-46 ND / Lus10032874 [exp] 145 / 3e-41 AT5G27260 53 / 1e-07 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G265900 [exp] 61 / 3e-10 AT2G24960 761 / 0.0 unknown protein Potri.002G200600 [exp] 59 / 2e-09 AT4G02210 471 / 1e-163 unknown protein Potri.005G252500 [exp] 57 / 4e-09 AT4G02210 74 / 9e-15 unknown protein Potri.013G025200 [exp] 57 / 9e-09 AT2G24960 514 / 2e-168 unknown protein Potri.006G191850 [exp] 45 / 1e-05 AT4G02550 71 / 2e-15 unknown protein Potri.010G215600 [exp] 46 / 2e-05 AT4G02550 77 / 7e-16 unknown protein Potri.011G163248 [exp] 45 / 3e-05 AT4G02550 93 / 4e-22 unknown protein Potri.004G172900 [exp] 42 / 0.0003 AT2G24960 96 / 1e-21 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10023062 pacid=23170365 polypeptide=Lus10023062 locus=Lus10023062.g ID=Lus10023062.BGIv1.0 annot-version=v1.0 ATGTCGCGGAAATACCTGACATGGTCCCCCCAAGAAGATCAAGTGCTGTTTGACATTCTGCTAAGCTTGCATGATTCTGGCGACATCCAAAATGGGACCC TAAAGGGATGTGGCTATAATCAAGTGCATAAGAGGTTGAAGCAAATCCTCCCTGACACCAAGCATGATTCGGAATCAATAAAGACCAAGTTTCGTGCCTA CAAAACCAAGTTCAATGCTCAGGTTGAAATAATGAATGCATCTGGCCTAGGTTGGGATGATGAGAGGGGGTGTTGTACTTGTGACAAGGAGGTTTGGGTG GAATGGGTTAAGGGGCATGCTAATGCTAAGGGGCTCTATAATACTAGAATTGCTCATTGGACTGAGTTGTGCAAGATATTTGAGTTTAACCAGGCTGATG GAACTGAAAGCATGACTGCGAATGATGCAGCCAGTGCTCTAGAGGCTGAAATTCGTGCTACTGGTAGTGCACCTTACCCTCCATTTCAGACCTATGCAGA TGCTAGCAACCCGATCATGGAAGACTTGATCAATGACGGGTTTGATATGAATGCTGAGGGTTTGAGAGATCTTGCAGAAGAAGCTTCAGCTGACGGTGGA GAGGAGACTGTATCAAGGGCACCAGAGAAAGGCAAGGCCAGTTCATCCGGTACGAAACGTACAAGGGCGAAAGCAGTCGATGAGTACTTAAACGCTATCC AGGTGCAAATAGAATCTATGACTGGCACCCTAACTACTACGTCGACACAAATCGTCAGGTTAGCAAACAATATGTGTTTGCCGGATGACATTGCGATGAA GAGATCACGGGTTATTGAAGAGATTTCACAGCTTCCAGGCATAAGCTACAACCAGCGATTGAAGGCCCATCGCATCTTCATGAATCAACCAGGGGATTTG GAAGCCTTCTTTCAGCTGCCGGATGACCAGATGAAGGAAGATTTCATCCTCAGCATATTGGAGTAA
AA sequence Show only first row Show all	>Lus10023062 pacid=23170365 polypeptide=Lus10023062 locus=Lus10023062.g ID=Lus10023062.BGIv1.0 annot-version=v1.0 MSRKYLTWSPQEDQVLFDILLSLHDSGDIQNGTLKGCGYNQVHKRLKQILPDTKHDSESIKTKFRAYKTKFNAQVEIMNASGLGWDDERGCCTCDKEVWV EWVKGHANAKGLYNTRIAHWTELCKIFEFNQADGTESMTANDAASALEAEIRATGSAPYPPFQTYADASNPIMEDLINDGFDMNAEGLRDLAEEASADGG EETVSRAPEKGKASSSGTKRTRAKAVDEYLNAIQVQIESMTGTLTTTSTQIVRLANNMCLPDDIAMKRSRVIEEISQLPGISYNQRLKAHRIFMNQPGDL EAFFQLPDDQMKEDFILSILE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02210			unknown protein		Lus10023062 [exp]	0	1
AT2G46950		CYP709B2	"cytochrome P450, family 709, ...		Lus10019186 [exp]	1.0	0.8414
					Lus10012672 [exp]	12.1	0.7531
AT1G15960		ATNRAMP6, NRAMP...	NRAMP metal ion transporter 6 ...		Lus10018132 [exp]	12.7	0.7134
AT1G09380			nodulin MtN21 /EamA-like trans...		Lus10001523 [exp]	16.5	0.7123
					Lus10006648 [exp]	18.8	0.7164
AT4G05200		CRK25	cysteine-rich RLK (RECEPTOR-li...		Lus10008656 [exp]	21.0	0.6855
AT5G41600		RTNLB4, BTI3	Reticulan like protein B4, VIR...		Lus10002188 [exp]	21.9	0.6913
AT2G21990			Protein of unknown function, D...		Lus10026148 [exp]	28.8	0.6596
AT1G10385			Vps51/Vps67 family (components...		Lus10017692 [exp]	30.6	0.6768
AT5G61890	AP2_ERF		Integrase-type DNA-binding sup...		Lus10022426 [exp]	47.4	0.6597

Compare expression of checked genes

Lus10023062 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.