Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42070 120 / 3e-35 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032408 [exp] 246 / 2e-84 AT5G42070 126 / 3e-37 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G089500 [exp] 138 / 4e-42 AT5G42070 128 / 5e-38 unknown protein Potri.003G141700 [exp] 132 / 5e-40 AT5G42070 129 / 2e-38 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10023063 pacid=23170410 polypeptide=Lus10023063 locus=Lus10023063.g ID=Lus10023063.BGIv1.0 annot-version=v1.0 ATGGCGTTCCCTTTGGTCTCAGTTCCAACGCATCATCCTCACACTCCCAAACTAACCTGGCTCCGTACCCCGCAACCGCCATCCCATAGCCCCTTCCTCC TCCGTCTTTCTTCTTCAAACTCCGTTTTGGAAACAGACGGCCCTTCTGCTCCAGATAGTCTTCCTCTCCAATCGGAAACTCCAATCCAAGATTCAGCCAC CAAACCGTTTTCTCTCAGTGGCTGTAAGGCGTGTGGGAAGGAAGAGATAGAGAAAGGATGCAACGGGGAAGGAAGGATTCAAGGTGGGATAGCTACTGTA CCTGGGTTTGGTTGGTGGCCAATCAAGGCTTATCGCCCTTGCCCTGGCTTTGTGGCTTCCGGTGGCCGTTACTACCGTCAAGGCCAAAGCATGGACGAGG TTGTCTCCGGCGGCGGCGGTGGAAGACGAGTCCCCATTCCTACTTCTTCCCCTTCCTCCTCCTCCTCCCAAACCGTGTCCTCCAACCCCAGGTAA
AA sequence Show only first row Show all	>Lus10023063 pacid=23170410 polypeptide=Lus10023063 locus=Lus10023063.g ID=Lus10023063.BGIv1.0 annot-version=v1.0 MAFPLVSVPTHHPHTPKLTWLRTPQPPSHSPFLLRLSSSNSVLETDGPSAPDSLPLQSETPIQDSATKPFSLSGCKACGKEEIEKGCNGEGRIQGGIATV PGFGWWPIKAYRPCPGFVASGGRYYRQGQSMDEVVSGGGGGRRVPIPTSSPSSSSSQTVSSNPR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G42070			unknown protein		Lus10023063 [exp]	0	1
AT4G32260		PDE334	PIGMENT DEFECTIVE 334, ATPase,...		Lus10041039 [exp]	1.7	0.9634
AT4G14615			unknown protein		Lus10006639 [exp]	2.4	0.9555
AT1G14345			NAD(P)-linked oxidoreductase s...		Lus10036729 [exp]	3.5	0.9446
AT5G08410		FTRA2	ferredoxin/thioredoxin reducta...		Lus10013448 [exp]	3.7	0.9599
AT4G37000		ATRCCR, ACD2	ARABIDOPSIS THALIANA RED CHLOR...		Lus10009352 [exp]	3.9	0.9588
AT4G09650		PDE332, ATPD	PIGMENT DEFECTIVE 332, ATP syn...		Lus10012452 [exp]	4.2	0.9597
AT4G09650		PDE332, ATPD	PIGMENT DEFECTIVE 332, ATP syn...		Lus10020508 [exp]	4.9	0.9591
AT4G24930			thylakoid lumenal 17.9 kDa pro...		Lus10028969 [exp]	5.3	0.9431
AT4G04640		ATPC1	ATPase, F1 complex, gamma subu...		Lus10002078 [exp]	7.5	0.9529
AT3G12780		PGK1	phosphoglycerate kinase 1 (.1)		Lus10031744 [exp]	7.9	0.9475

Compare expression of checked genes

Lus10023063 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.