Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G10925 331 / 2e-115 Nuclear transport factor 2 (NTF2) family protein (.1), Nuclear transport factor 2 (NTF2) family protein (.2), Nuclear transport factor 2 (NTF2) family protein (.3) AT4G23960 144 / 2e-43 F-box family protein (.1) AT4G23970 69 / 8e-15 unknown protein AT3G09250 71 / 4e-14 Nuclear transport factor 2 (NTF2) family protein (.1), Nuclear transport factor 2 (NTF2) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032407 [exp] 488 / 2e-176 AT4G10925 338 / 2e-118 Nuclear transport factor 2 (NTF2) family protein (.1), Nuclear transport factor 2 (NTF2) family protein (.2), Nuclear transport factor 2 (NTF2) family protein (.3) Lus10001815 [exp] 362 / 5e-128 AT4G10925 317 / 4e-111 Nuclear transport factor 2 (NTF2) family protein (.1), Nuclear transport factor 2 (NTF2) family protein (.2), Nuclear transport factor 2 (NTF2) family protein (.3) Lus10003192 [exp] 217 / 2e-71 AT4G10925 187 / 2e-60 Nuclear transport factor 2 (NTF2) family protein (.1), Nuclear transport factor 2 (NTF2) family protein (.2), Nuclear transport factor 2 (NTF2) family protein (.3) Lus10021504 [exp] 72 / 2e-14 AT3G09250 272 / 2e-92 Nuclear transport factor 2 (NTF2) family protein (.1), Nuclear transport factor 2 (NTF2) family protein (.2) Lus10022605 [exp] 69 / 5e-14 AT3G09250 265 / 3e-91 Nuclear transport factor 2 (NTF2) family protein (.1), Nuclear transport factor 2 (NTF2) family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G089600 [exp] 369 / 4e-129 AT4G10925 347 / 2e-121 Nuclear transport factor 2 (NTF2) family protein (.1), Nuclear transport factor 2 (NTF2) family protein (.2), Nuclear transport factor 2 (NTF2) family protein (.3) Potri.003G141600 [exp] 353 / 3e-123 AT4G10925 350 / 9e-123 Nuclear transport factor 2 (NTF2) family protein (.1), Nuclear transport factor 2 (NTF2) family protein (.2), Nuclear transport factor 2 (NTF2) family protein (.3) Potri.006G093700 [exp] 73 / 2e-14 AT3G09250 266 / 5e-89 Nuclear transport factor 2 (NTF2) family protein (.1), Nuclear transport factor 2 (NTF2) family protein (.2) Potri.016G105600 [exp] 72 / 2e-14 AT3G09250 281 / 4e-96 Nuclear transport factor 2 (NTF2) family protein (.1), Nuclear transport factor 2 (NTF2) family protein (.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10023064 pacid=23170286 polypeptide=Lus10023064 locus=Lus10023064.g ID=Lus10023064.BGIv1.0 annot-version=v1.0 ATGGAGATTATCCCCGACTTCTCTTCTCAAACTTTCCTCTTAGCCTCCTCCTTCACTCTCCTCTCCCTCTTGCTAACTCTCCTCTCTATTCGACACTTGA AATCGCCCGACAAATCTCGTTCGTCGTCGTTCAGGTGCAGGACTTGTAATTCTGGGTGCTCCGGTGAGGGGACCGTCGGAAATTCCGTTAACAGGGGAGG TGAAGCTGCGGCGGAGATGTTAGTGGCTGCTAGAGAAGGAACGGGAGTGGAGAGGCAGTGTGGGGCGTCAATGATGGAGCAGCTGGTTCCTGAGATAACG ACGCACGCGCTGAGTTATTTGGATTACCCGAGTCTGTGTAGATTGTCCATGACTAATTCGTTGATGCGGAAGGCTGCTAATGACGACAATGCTTGGAAAG CTCTGTATCACAAGGATTTCACGTTGGAACAAGATACTGTTACACCTGTTAATGGATGGGAAGCTTACTTTGCAGCTACAAGAGCCATTGTCAATCTGAA TGCAGAATTCTTCAACATTATCAGAGAAAGTAGTCTTCAGGATATGAGCCGCCTTTGGCTTCATGCAGATGATGGGAAATGCGTCCATGCATCAGGAGAA CTCTTTTCAGGGTACAACGCGGTTATACAGAGTTGGCAGCTGGCATTCAACTGGGAGCAAGGAGTGGACTTCCAGGTACGAGATGTCGGAGTTCGAGTCC TGACAGACATAGCTTGGGTTAGCATGAAGACATATGTTGACGTGGACACAGGGCCGTTTCACGTGACGAACGTGTTTGAGTTCCACAACGGAAGGTGGTA CATGGTGCATCATCACAGTTCAGTTGATCAGCAGATTATGCATCCGTAA
AA sequence Show only first row Show all	>Lus10023064 pacid=23170286 polypeptide=Lus10023064 locus=Lus10023064.g ID=Lus10023064.BGIv1.0 annot-version=v1.0 MEIIPDFSSQTFLLASSFTLLSLLLTLLSIRHLKSPDKSRSSSFRCRTCNSGCSGEGTVGNSVNRGGEAAAEMLVAAREGTGVERQCGASMMEQLVPEIT THALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQDTVTPVNGWEAYFAATRAIVNLNAEFFNIIRESSLQDMSRLWLHADDGKCVHASGE LFSGYNAVIQSWQLAFNWEQGVDFQVRDVGVRVLTDIAWVSMKTYVDVDTGPFHVTNVFEFHNGRWYMVHHHSSVDQQIMHP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G10925			Nuclear transport factor 2 (NT...		Lus10023064 [exp]	0	1
AT3G51650			unknown protein		Lus10009100 [exp]	1.0	0.8525
AT1G01500			Erythronate-4-phosphate dehydr...		Lus10005124 [exp]	2.4	0.7957
AT5G44080	bZIP		Basic-leucine zipper (bZIP) tr...		Lus10029784 [exp]	4.7	0.8281
AT5G41950			Tetratricopeptide repeat (TPR)...		Lus10018184 [exp]	6.2	0.8230
AT3G13224			RNA-binding (RRM/RBD/RNP motif...		Lus10032595 [exp]	8.5	0.7696
AT5G51410			LUC7 N_terminus domain-contain...		Lus10038924 [exp]	8.7	0.7593
AT1G74900		OTP43	organelle transcript processin...		Lus10042307 [exp]	9.9	0.7713
AT5G47750		PK5, D6PKL2	D6 protein kinase like 2 (.1)		Lus10038753 [exp]	12.8	0.8005
AT4G31010			RNA-binding CRS1 / YhbY (CRM) ...		Lus10036545 [exp]	13.5	0.7642
AT3G04470			Ankyrin repeat family protein ...		Lus10029612 [exp]	13.8	0.7558

Compare expression of checked genes

Lus10023064 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.