Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23950 399 / 4e-132 Galactose-binding protein (.1.2) AT1G71360 333 / 3e-106 Galactose-binding protein (.1) AT1G22882 330 / 5e-104 Galactose-binding protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032405 [exp] 1097 / 0 AT4G23950 446 / 5e-150 Galactose-binding protein (.1.2) Lus10002929 [exp] 309 / 5e-95 AT1G71360 476 / 1e-159 Galactose-binding protein (.1) Lus10003532 [exp] 290 / 3e-90 AT1G71360 432 / 3e-146 Galactose-binding protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G089700 [exp] 531 / 0 AT4G23950 399 / 3e-132 Galactose-binding protein (.1.2) Potri.003G141500 [exp] 528 / 0 AT4G23950 411 / 4e-137 Galactose-binding protein (.1.2) Potri.019G068900 [exp] 340 / 6e-109 AT1G71360 484 / 3e-165 Galactose-binding protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0202 [flax] [poplar] GBD PF07738 [flax] [poplar] Sad1_UNC Sad1 / UNC-like C-terminal
Representative CDS sequence Show only first row Show all	>Lus10023065 pacid=23170376 polypeptide=Lus10023065 locus=Lus10023065.g ID=Lus10023065.BGIv1.0 annot-version=v1.0 ATGAGGAAGCAACCTCGGAATAGTAACATCAGCAACGGCACCGGCACCGGCACCGGCGGCGGAGGAGGAAACTTACCGGTAGGAAACTCCCCCGTCAGGT GCCGGGAAATTAGAATCGATAATCAGAAAGAGGACCACAGCGTTTGCTGCAACCACAACGACAAGAGGAATCATCTCAGGAATGGGAGAGGGAAACGCAG CTTGTACGAGCTTTCTTTATCGTTCATCCTCTTGCTTTGGTCCCTCGTTTTCTACACCAGACTCGGCCTCACCCACCAGAACGAAGGGAATTCAACTGGT GATGGGGTCAGCAAACCAATTCCAGGTCCTATTTCTCCATATAGAGGAAACTACAGTCCAAGTGGAATGTTGTTGAATTTTAATGTCTCCTCGGATACTA GTGTCAATAATTCTCCAATTCATCTTCATTTTTCTAATTGTAAGTGCTCCATTCCCAAGACAAATAGAACGGAAGAGGTGATCAGGAGCTTTTTAGGAGA TAGAGTTTTAGTGTGTAGCTTAAGGAGTCCAGAAGAATTGGAATTAGGTAACTTGAATGAACTACCGGGAGGTAAATCGTCTTATGATTCGGGTCCTTAT CTCAATCTGAATGAGTTCAGGAACATAACCAAGCAAGATAAAGAACAGAATGTGTCCACCGAACATGCCAATATCGCCCACCGGCTTGAACCTGATGGGT CCGAGTACAATTTTGCCTCTGCAATGAAAGGCGCAAAGGTGGTGGCACATAATAAGGAAGCCAAAGGAGCTGGAAATATACTAGGAGAGGATCATGACAA GTACTTGAGGAACCCTTGTTCTGTTGGGGAGAAGTTTGTAGTCATTGAGCTTTCAGAGGAGACTTTGGTTGATGTGGTGAAGATTGCAAATTTCGAGCAC TACTCTTCGAATTTCAAGGATATTGTATTGTATGGAAGTTTGAATTATCCGACTAATGCTTGGACGCTATTCGGGGAGTTTGCTGCTGCAAATGCCAAGC AGATTCAAAATTTTAAGCTGCCTGAACCAAAATGGGCAAGATACTTGAAGCTGAACCTGCTTAGTCACTACGGCTCGGAGTTCTACTGCACGTTGAGTGT TTTTGAGGTACATGGAGTTGATGCCATTGACCGAATGCTTAAAGATCTTTTGGTTCCATCTAAAGAATCTGCTCCTAGTTATTCACCAGAGTCAATTGAG CCTCCAGCTGTAAAGCTAGAGACAGGAACAGTTTCAAAAGAAGCTGATAATGCTGGTAAAGGGAAAGAAAACGGTGATGATGGTCAACAGAAGCATGGAA ATGTAGTGAAGAGCAGCGGAACCTTGAGTGAGATTCCTGATCCCGTGAGTGAAGTAAGACAAATGCCATCATCTAAGAGGATACCTAGTGATACCGTTCT AAAGATCTTGATGCAGAAGGTGAGATCACTTGAGGTGAACTTGTCATTACTGGAGGAGTACATCAGGCAACTGAATCGTAAGCAAGGTGATGTGTTACTC GAGTTTGATAAGGAGCTATCGAGAATCTCATCGATCGTGGAACTCAGCAAAACCGAACTTAGCGGCCTTACGAAATGGAAACAGGAGATGGAAAAAGGAC TCGGGGAGCTTGAGTCATGGAAAGATGTTGTATCTACACGCTTGGATACACTCGGCAGAGAAAATGACATGCTAAGATATGATGTTCAAAAGGTGGGGAA CGATCAAGCGAGCCTGGAAAACAAAGAGATGGCAGTGCTATTAATCAGCCTGTTCTTCCTGTGTTTCGCTACCATAAAGTTCTTAGGAGCTTCCTCCTCC TCTTCATCCTCCACCCGGCCGAATAAAGTTCACCAAGCCAATGGTGGCGGAGGCGGCGGTAGTGGAGGGTGGCTTATGATTCTGGTTAGCAGCACTATGA CCATCTTCATCACCTTGCTCTCTAGTTAG
AA sequence Show only first row Show all	>Lus10023065 pacid=23170376 polypeptide=Lus10023065 locus=Lus10023065.g ID=Lus10023065.BGIv1.0 annot-version=v1.0 MRKQPRNSNISNGTGTGTGGGGGNLPVGNSPVRCREIRIDNQKEDHSVCCNHNDKRNHLRNGRGKRSLYELSLSFILLLWSLVFYTRLGLTHQNEGNSTG DGVSKPIPGPISPYRGNYSPSGMLLNFNVSSDTSVNNSPIHLHFSNCKCSIPKTNRTEEVIRSFLGDRVLVCSLRSPEELELGNLNELPGGKSSYDSGPY LNLNEFRNITKQDKEQNVSTEHANIAHRLEPDGSEYNFASAMKGAKVVAHNKEAKGAGNILGEDHDKYLRNPCSVGEKFVVIELSEETLVDVVKIANFEH YSSNFKDIVLYGSLNYPTNAWTLFGEFAAANAKQIQNFKLPEPKWARYLKLNLLSHYGSEFYCTLSVFEVHGVDAIDRMLKDLLVPSKESAPSYSPESIE PPAVKLETGTVSKEADNAGKGKENGDDGQQKHGNVVKSSGTLSEIPDPVSEVRQMPSSKRIPSDTVLKILMQKVRSLEVNLSLLEEYIRQLNRKQGDVLL EFDKELSRISSIVELSKTELSGLTKWKQEMEKGLGELESWKDVVSTRLDTLGRENDMLRYDVQKVGNDQASLENKEMAVLLISLFFLCFATIKFLGASSS SSSSTRPNKVHQANGGGGGGSGGWLMILVSSTMTIFITLLSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G23950			Galactose-binding protein (.1....		Lus10023065 [exp]	0	1
AT5G59160		PPO, TOPP2	PROTOPORPHYRINOGEN OXIDASE, ty...		Lus10040742 [exp]	10.3	0.7757
AT4G03430		EMB2770, STA1	STABILIZED 1, EMBRYO DEFECTIVE...		Lus10039811 [exp]	22.2	0.7591
AT5G15280			Pentatricopeptide repeat (PPR)...		Lus10033008 [exp]	36.7	0.7407
AT5G18950			Tetratricopeptide repeat (TPR)...		Lus10024666 [exp]	54.3	0.7131
AT3G15390		SDE5	silencing defective 5 (.1.2)		Lus10025646 [exp]	55.6	0.7188
AT4G02820			Pentatricopeptide repeat (PPR)...		Lus10042574 [exp]	91.6	0.7098
AT3G48670		RDM12, IDN2	RNA-DIRECTED DNA METHYLATION 1...		Lus10000951 [exp]	128.5	0.6941
AT1G12530			unknown protein		Lus10006705 [exp]	141.4	0.6787
AT3G12940			2-oxoglutarate (2OG) and Fe(II...		Lus10027382 [exp]	165.5	0.6779
AT3G01460		MBD9, ATMBD9	methyl-CPG-binding domain 9 (....		Lus10030624 [exp]	178.2	0.6415

Compare expression of checked genes

Lus10023065 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.