Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32050 336 / 1e-107 neurochondrin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032403 [exp] 650 / 0 AT4G32050 645 / 0.0 neurochondrin family protein (.1) Lus10001536 [exp] 211 / 2e-64 AT4G32050 125 / 9e-33 neurochondrin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G022800 [exp] 664 / 0 AT4G32050 751 / 0.0 neurochondrin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF05536 [flax] [poplar] Neurochondrin Neurochondrin
Representative CDS sequence Show only first row Show all	>Lus10023067 pacid=23170337 polypeptide=Lus10023067 locus=Lus10023067.g ID=Lus10023067.BGIv1.0 annot-version=v1.0 ATGGAGGAAGCTCCAACTCCATCAATCGCTGACTGCTTGAAGCTACTGAAAGGCGAGAGGGACGAGCAACGCCTGGCTGGTTTACTTTTAGTCACCAAAG TTTGCAAGCGAGACGACCTCGCCTCTTTGCGCGCCGTTTATGATGCCGTAGACGTTCGCTTCCTTGATAGGCTCTTCAAGACCGGGATGGGAAAAGGACC TGCTGCAGGCAGCGGGGTGGATAACCGAGATGCATACTTGCTGCTGACGGTTACTATTGTTGCTGCATTTTGCCGTGTTCCCGAAATCGCTGCTTCTGGA GATATGGTTTCAAAGATTCCAATGATTCTGAAAATAATGGCCGCATCGAATGCTCCTATTCTTGAAGAATGTTGTGAGATTTTATATCTGGTAGCAACTT CTTCAGAAGATGGAGTGAGCGGTTTTTATCAATCTGATGGCCTCAGAGTCGTAGCTTCAAGAACGCATATGATACCTGATGGCTCTCATACCGCAGAACT ATTGATCAAGATGTTACTGCATATACTTAGTAAGCTGCCTCAAGATTTCAGAACAAGCAACCATCTTTCAGACCTTGCAACTGTGGTGGAATATTTGGGA AGACAGTTTGGTTTATTGCAGAGTCCCTTGAAATTCGATGCAGTTCATTTATCTCTCAGATCTTCTCATCGAAGCATTCGGCGACGTATATCCGGGGAGA AATGGCTGCTCCGGCAGCCAAAATTAACTGATCTTCAAGTGCCATTGCCAATTGACAGGTGTCTATTGCTTGTCTTGGAATCTGCAAGAGTAGAAGTGGC TGTTTTGCTGAATGAGCTGGCCTATCTGAAGTATGAAGCTTCAAAGAGTACTTTATGTGATGACACCATTTCCTCAAAGCAGCAAAATCTAACTATTGTA TTCTCCTTGATCGAGAGAATAATCAAACTGATATCAGAAATGGCTGAACTTGAAGGGAAAGTTATTGACGAATCAACTATCATCAATATGATCAATGGGC TTAATGAGACAGCTACTATAGTGTTGGAGTATTTGCAAGATGCAAGGGAGCACGGAGAAAAGAAAGGAAATGACCTTCTTGCTTCAGTACGGCTTCTTGG GAGCTATCTCGCCGAAACACCCAATGCCTTGAAGGAGAAGGTCGAAGAGCTTTTGGAGTACATGTTGTCAATTGAAGGTGAAGATGAAACAAGCCTTTTT TATTCGTTATGCTTCCTACTCCCAATGCTTTGCCAAATGACAATGGAGTTTCAAGGATGCAAAACTTTGATTTCATCCGGATGCCATAAGACTGTGGTGG AATTTTTGACAAGGTTGATCCATAGCCACAGAGAAGATGTTGATCGCATCTTTTTGGCATGCGACACAGTAATGAATCTTCTTTTGAAGCAAGATCAACT ACTCTTCAGGGTGGAAGAATCAACTTGCGTTGATTTGTTGAATGCTTTGTCGTTCTGGGCAGAAGAGACTAATGATCAATCCGTTCTGATGATGGCGGCA AGTATGTGTGCACTAATATTAGATTCCACATCAGAGGCGGCCCTTTTAAATCATCCAAATTTCGACGTTAGATCTCTAAGCCGTCTATGTCAGCTCATTT CAAGAAGCTTAGCATTGTCTAAAAAGGGCAGGGCAGACGATGTTGAAGCACAAATGGATCTGATTGAGATTGTTACTGCAGGATTCTCAAGATGGGCCAA CCTGTTTCCCAGCCTAAAAGCAGCAGCAGCACTTGAGGAAAATTGA
AA sequence Show only first row Show all	>Lus10023067 pacid=23170337 polypeptide=Lus10023067 locus=Lus10023067.g ID=Lus10023067.BGIv1.0 annot-version=v1.0 MEEAPTPSIADCLKLLKGERDEQRLAGLLLVTKVCKRDDLASLRAVYDAVDVRFLDRLFKTGMGKGPAAGSGVDNRDAYLLLTVTIVAAFCRVPEIAASG DMVSKIPMILKIMAASNAPILEECCEILYLVATSSEDGVSGFYQSDGLRVVASRTHMIPDGSHTAELLIKMLLHILSKLPQDFRTSNHLSDLATVVEYLG RQFGLLQSPLKFDAVHLSLRSSHRSIRRRISGEKWLLRQPKLTDLQVPLPIDRCLLLVLESARVEVAVLLNELAYLKYEASKSTLCDDTISSKQQNLTIV FSLIERIIKLISEMAELEGKVIDESTIINMINGLNETATIVLEYLQDAREHGEKKGNDLLASVRLLGSYLAETPNALKEKVEELLEYMLSIEGEDETSLF YSLCFLLPMLCQMTMEFQGCKTLISSGCHKTVVEFLTRLIHSHREDVDRIFLACDTVMNLLLKQDQLLFRVEESTCVDLLNALSFWAEETNDQSVLMMAA SMCALILDSTSEAALLNHPNFDVRSLSRLCQLISRSLALSKKGRADDVEAQMDLIEIVTAGFSRWANLFPSLKAAAALEEN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G32050			neurochondrin family protein (...		Lus10023067 [exp]	0	1
AT5G61980		AGD1	ARF-GAP domain 1 (.1)		Lus10036018 [exp]	2.0	0.8730
AT2G32630			Pentatricopeptide repeat (PPR-...		Lus10018019 [exp]	7.7	0.8608
AT2G23890			HAD-superfamily hydrolase, sub...		Lus10019962 [exp]	8.1	0.8726
AT5G14590			Isocitrate/isopropylmalate deh...		Lus10013090 [exp]	8.6	0.8774
AT3G23100		XRCC4	homolog of human DNA ligase iv...		Lus10021220 [exp]	13.0	0.8467
AT4G11640		ATSR	serine racemase (.1)		Lus10008490 [exp]	19.8	0.8635
AT1G73020			unknown protein		Lus10009732 [exp]	20.0	0.8512
AT3G15150		HPY2, ATMMS21	HIGH PLOIDY2, A. THALIANA METH...		Lus10015968 [exp]	26.3	0.8461
AT5G66600			Protein of unknown function, D...		Lus10016786 [exp]	26.5	0.8298
AT5G54890			RNA-binding CRS1 / YhbY (CRM) ...		Lus10040080 [exp]	31.3	0.8520

Compare expression of checked genes

Lus10023067 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.