Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G10930 425 / 1e-130 unknown protein AT4G10940 246 / 7e-75 RING/U-box protein (.1) AT3G05670 75 / 3e-13 RING/U-box protein (.1) AT3G58030 54 / 4e-07 RING/U-box superfamily protein (.1.2.3.4) AT5G10380 50 / 7e-06 ATRING1, RING1 RING/U-box superfamily protein (.1) AT2G42030 49 / 2e-05 RING/U-box superfamily protein (.1) AT2G39100 47 / 3e-05 RING/U-box superfamily protein (.1) AT1G13195 47 / 4e-05 RING/U-box superfamily protein (.1.2) AT5G01520 45 / 0.0002 AtAIRP2, AIRP2 ABA Insensitive RING Protein 2, RING/U-box superfamily protein (.1.2) AT1G24440 45 / 0.0002 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032402 [exp] 2172 / 0 AT4G10930 553 / 3e-179 unknown protein Lus10001535 [exp] 621 / 0 AT4G10940 189 / 4e-59 RING/U-box protein (.1) Lus10015213 [exp] 72 / 3e-12 AT3G05670 368 / 2e-112 RING/U-box protein (.1) Lus10031468 [exp] 69 / 1e-11 AT3G05670 343 / 2e-107 RING/U-box protein (.1) Lus10004162 [exp] 54 / 4e-07 AT3G58030 367 / 3e-124 RING/U-box superfamily protein (.1.2.3.4) Lus10021063 [exp] 53 / 1e-06 AT3G58030 362 / 1e-122 RING/U-box superfamily protein (.1.2.3.4) Lus10029292 [exp] 51 / 5e-06 AT3G58030 374 / 6e-127 RING/U-box superfamily protein (.1.2.3.4) Lus10016255 [exp] 51 / 5e-06 AT3G58030 362 / 2e-122 RING/U-box superfamily protein (.1.2.3.4) Lus10018489 [exp] 46 / 9e-05 AT4G03510 159 / 7e-48 RING membrane-anchor 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G089900 [exp] 1189 / 0 AT4G10930 506 / 5e-160 unknown protein Potri.005G021000 [exp] 70 / 8e-12 AT3G05670 436 / 2e-140 RING/U-box protein (.1) Potri.013G011400 [exp] 69 / 1e-11 AT3G05670 417 / 7e-133 RING/U-box protein (.1) Potri.006G193600 [exp] 52 / 2e-06 AT3G58030 389 / 2e-132 RING/U-box superfamily protein (.1.2.3.4) Potri.016G058300 [exp] 52 / 3e-06 AT3G58030 331 / 7e-110 RING/U-box superfamily protein (.1.2.3.4) Potri.004G041200 [exp] 49 / 6e-06 AT3G47160 313 / 1e-108 RING/U-box superfamily protein (.1.2) Potri.016G115300 [exp] 49 / 8e-06 AT5G01520 339 / 6e-119 ABA Insensitive RING Protein 2, RING/U-box superfamily protein (.1.2) Potri.009G023300 [exp] 49 / 2e-05 AT2G44410 192 / 3e-56 RING/U-box superfamily protein (.1) Potri.011G050700 [exp] 47 / 3e-05 AT3G47160 311 / 5e-108 RING/U-box superfamily protein (.1.2) Potri.006G099600 [exp] 47 / 4e-05 AT5G01520 324 / 4e-113 ABA Insensitive RING Protein 2, RING/U-box superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0390 [flax] [poplar] zf-FYVE-PHD PF00628 [flax] [poplar] PHD PHD-finger
Representative CDS sequence Show only first row Show all	>Lus10023068 pacid=23170413 polypeptide=Lus10023068 locus=Lus10023068.g ID=Lus10023068.BGIv1.0 annot-version=v1.0 ATGATGGAGGTGGATTTCATCACCAGCGGGATGTACGACGAAGAGACCGTTCAAATCGAGGAACATCATGATAATTCTGTCATCGATGGTGAAAGATGTG GGATATGTATGGACTTCATCATTGACAGGGGGGTTCTTGATTGCTGTCAGCACTGGTTTTGTTTTGGCTGCATCGACAACTGGGCTTCAATCACAAACTT GTGCCCTCTTTGCCAGAATGAGTTTCAATTGATCACATGTGTTCCGGTCTATGATACCCTTGGTAATAACAAGGTTGACGAGGAATCATTGTCCAGCAGG GACAATGAATGGTCTGTTGAAGAAGATAGCAGCAATTTGTCTTTTCCTTCCTACTACATTGATGAAAATGCAGTTACCTGCCTGGATGGAAATGGTTGCA GAATCCGAAGTGAATCCATGAATATTGAAGAAGATCATAATCTCGATACTTCCATCGCTTGTGATTCTTGTGATACTTGGTATCATGCTTTTTGTGTCGG GTTTGATGCTGACGGTACATGTGAAGATACATGGTTATGCCCAAGATGTATGGTTGAGGAACTGCCTCATAAGTCAGATGCAACTTCTGCACAGATGGCA AATGACCAATGTATGGAAACTTTGGATACAAGCAGTGTCACTGATGATTGCTTTCCTGGAAAGATGTCGGTCTGCGCTGTTGACCCTGGAGAGACAGCTG TTGTCATCTCTATGGTTGGAGGAAATAAGTGGGCTGAATTACCTACTGAAGAGTATAGCCCTATACGAGAAGTTGGCTTGGAGTTCATGGTTGATGAATT TCGGTCTGAGGCCCATCTTAACCCTCAAAATATACTGAATGGAGTTGATGATATCAAATCAGTCTCGGAAGGTCCAGAACGCGAGGTTTCCTTGTCAAGT GATACATTGACTCCTGCTGAATTGAAGAGCAGTCAGGCTGATGCTGCAGCCATTCAACCCAATTCAGGTGGCGGTCAGACTTCACAGAATTTGTTTACCG AGTCTGCAGTTGGTTGTGTTCAGTCTAGTATACATGTGGAAAGCCCTTCATGTGCCAACTTCGTTAATAATGGAACCCAGGACCACATAAGTGCAATTAT AGGTCATAGAAATGTTTCTGAAGATTCGTCATTAACAGACGAGAAAGTTGTACCAAGTGCTGGTAAGGAGGCTGCCAAAAGCATTGGTGTTAAGAGAAAA ATGATAGAGTGCAGTGATGGTGTTTCTGCGAGTATTAGCAGTGGAGAACCAAATGATAAGAGTGATGGTGCAGTTCCTCTGAAGAAAAATAGAGCTAAGG GAAAGTCTCAAAAGATCCTATCCAGAGAGCTGGCCAATGCATCTTCTTATGATATGCAGAAGGGCTCTAATGAGGCTGCGGTTGCTAGAGATATCAAGTC CATAAAGCGTCAGGGAAAAGGCAAAGCTGAAAGGTCAGATATCATGAGCATTGTTCAAGGGACGGGCCACGGACCTTCCAAGATTTTGGCAGAATCCTCA AAAGGGAGGGAAATTTCTGGAGGCTTGAGAATGAAAAAGATCATGAGGACGACTACAAAGGCTGATCAGGACTCATCTGTAGTAGTTAGAAAGCTCAGAG AAGAAATTAAGGAAGCCGTTGGTAACAGATCCTCTGCTAATATGGGAGAGAACATTTTGGACCCAAAGCTTCTGGCTGCTTTCCGAGCTGTCATTGCAGG CCCCACAGCTGAACCTGTGAAAAAGTTAGCACCAGCTTCTTTGAAGGTGAAGAAATCCTTGCTACAGAAAGGTAAAGTTCGTGAGAATCTTACAAAGAAA ATATATGGAGACTCTAATGGGCGAAGAAAACGTGATTGGGACAGAGACTGTGAGGTTGAATTTTGGAAGTATCGCTGTATGAGGGCCTCGAAACCCGAGA AGATTGCAACCTTAAATTCAGTTCTGGATCTTCTCAGAAAGACTCCTGAAGGAACAGTAGTGGAGAGCGCTCCCAAGCAGAAGTCGGAAAGTCCAATTCT ATCCAGATTGTATTTAGCGGATACGTCGGTCTTCCCTAGACAGAATGACATCAAACCTCTATCTGCTCTTGCAACCACAAGTGATTCTGAAAAGAATTCG GCTGCAAATGGTCAGAAAGGTTCTGCCAGTAATCATATGTCAAGGCAGGTGGATGCTGATAGAGTTCAATCAAAGCATGTTTCTGCGCTTCAAGGTTACA AGGATAATATTGTCCCTTCTAAGAGTAGCCCTGTAGCTTCGTCAAATGGTGGTAACGGAAAGTTGAAGAACGATACTGATGTGAAATCTGATGATAAGAA GCTTGATAAAAGAAAATGGGCCCTGGAGGTCCTTGCTCGGAAAAAGGCTGCTTCAGCTAACGTTAAAAAGGATGAAAGCGAAGATGACAAAGTTATGCTT AAAGGGAACTTTCCATTGCTTGCTCAATTGTCAAAAGATATGAGACCAGCATTGGCACCTAGTCAGAACAGTAAGATTCCCGTTTCAGTTAGGCAGACAC AGCTATACCGCTTGACAGAATTCTACCTGAAGAAACTAAATTTGCCGGAGATTCGCAGAACTGCAGAAACAGAGTTAGCCGTAGCAGATGCTATCAATAT TGAGAAGGAGGTTGCTGAAAAGTCAAGTACCAAAATGGTATATGTGAACCTCTGTTCTCAGCGATTGTTGCATCGTTCAGATAACGCCAAGACTGTCAGA GCTGCAGAATCAGCAACATCATCTGTTCCGGCTGTCCCGGCAGATCAAGAACAATCCAGAAATGAAATTCCTGCTGATCCAGAAATTGAAGAAGCACTGA GACTGGCTGGCCTTTTATCCGATTCTCCTCCAGCAAGTCCAGTTCACAAGCTGGATGAAGGAGGCGATTCCTCTGTGCAGGCTAATGAAGAAGGGCCTGA TAACATACTGGAAATTGATTCCGTTCCAGAAGCAGATATTTACGGAGACTTTGAGTATGATTTGGACGACGAAGACTACCTCGGTGCAACTTCTATTAAT GTCTCCAAGACTTCGCAAGAAGAAGTCGAAGCAAAGATGAAACTCGTCTTCTCTACTCTAAAATTAGAAGAGCCAGATAACTCTGGAGACAGTAACAAGT TGTCTGGAAATTGTGGGTCGACCATAGAATTGGCCAATAACGAGTCTTGCGTTCCTCCCGAAAGCTTGCCTGGCGAAGAAGGCGAAGAACCTTCTCTTGC CGAATGTGAAGAACTGTATGGCCCAGAAAAGGAACCAATGATGAGTAAATTCCAGATCGATGTTCCATCTGAGAACAAATCAAGTCAAGGTGATAACGTA ACTTCTAGCTCCAATGCTCAAAGCCCTAATGAGAAAAAACCATCTAGCCACCCTCACTCAAGTGATGGACAATCAAGGAAGGAGGATACTAAGTCCGTGT CTGAAGCTGCCAATTCTGTTTCGAAGAAGGTTGAAGCTTATATCAAAGAGCACATACGCCCACTGTGTAAAAGTGGAGTGATCAATGTGGAACAGTACAG ATGGGCTGTATCGAAAACAACCGACAAGGTAATGAAGTACCATACGAATTCAAAGAATGCTAGTTTCCTGATCAAGGAAGGGGAGAAGGTGAAGAAGCTC GCTGAGCAATATGTTGAGGCAGCTGCATTGCAAAAGGATTCATCGTGA
AA sequence Show only first row Show all	>Lus10023068 pacid=23170413 polypeptide=Lus10023068 locus=Lus10023068.g ID=Lus10023068.BGIv1.0 annot-version=v1.0 MMEVDFITSGMYDEETVQIEEHHDNSVIDGERCGICMDFIIDRGVLDCCQHWFCFGCIDNWASITNLCPLCQNEFQLITCVPVYDTLGNNKVDEESLSSR DNEWSVEEDSSNLSFPSYYIDENAVTCLDGNGCRIRSESMNIEEDHNLDTSIACDSCDTWYHAFCVGFDADGTCEDTWLCPRCMVEELPHKSDATSAQMA NDQCMETLDTSSVTDDCFPGKMSVCAVDPGETAVVISMVGGNKWAELPTEEYSPIREVGLEFMVDEFRSEAHLNPQNILNGVDDIKSVSEGPEREVSLSS DTLTPAELKSSQADAAAIQPNSGGGQTSQNLFTESAVGCVQSSIHVESPSCANFVNNGTQDHISAIIGHRNVSEDSSLTDEKVVPSAGKEAAKSIGVKRK MIECSDGVSASISSGEPNDKSDGAVPLKKNRAKGKSQKILSRELANASSYDMQKGSNEAAVARDIKSIKRQGKGKAERSDIMSIVQGTGHGPSKILAESS KGREISGGLRMKKIMRTTTKADQDSSVVVRKLREEIKEAVGNRSSANMGENILDPKLLAAFRAVIAGPTAEPVKKLAPASLKVKKSLLQKGKVRENLTKK IYGDSNGRRKRDWDRDCEVEFWKYRCMRASKPEKIATLNSVLDLLRKTPEGTVVESAPKQKSESPILSRLYLADTSVFPRQNDIKPLSALATTSDSEKNS AANGQKGSASNHMSRQVDADRVQSKHVSALQGYKDNIVPSKSSPVASSNGGNGKLKNDTDVKSDDKKLDKRKWALEVLARKKAASANVKKDESEDDKVML KGNFPLLAQLSKDMRPALAPSQNSKIPVSVRQTQLYRLTEFYLKKLNLPEIRRTAETELAVADAINIEKEVAEKSSTKMVYVNLCSQRLLHRSDNAKTVR AAESATSSVPAVPADQEQSRNEIPADPEIEEALRLAGLLSDSPPASPVHKLDEGGDSSVQANEEGPDNILEIDSVPEADIYGDFEYDLDDEDYLGATSIN VSKTSQEEVEAKMKLVFSTLKLEEPDNSGDSNKLSGNCGSTIELANNESCVPPESLPGEEGEEPSLAECEELYGPEKEPMMSKFQIDVPSENKSSQGDNV TSSSNAQSPNEKKPSSHPHSSDGQSRKEDTKSVSEAANSVSKKVEAYIKEHIRPLCKSGVINVEQYRWAVSKTTDKVMKYHTNSKNASFLIKEGEKVKKL AEQYVEAAALQKDSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G10930			unknown protein		Lus10023068 [exp]	0	1
AT5G63280	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10014794 [exp]	2.0	0.9176
AT3G45630			RNA binding (RRM/RBD/RNP motif...		Lus10018125 [exp]	2.0	0.9157
AT2G01460			P-loop containing nucleoside t...		Lus10027063 [exp]	5.2	0.9141
AT5G10650			RING/U-box superfamily protein...		Lus10026226 [exp]	5.9	0.9002
AT3G48195			Phox (PX) domain-containing pr...		Lus10001232 [exp]	6.6	0.8828
AT5G36930			Disease resistance protein (TI...		Lus10012311 [exp]	9.9	0.8209
AT4G39910		ATUBP3	ubiquitin-specific protease 3 ...		Lus10041705 [exp]	10.8	0.8776
AT1G19220	ARF	IAA22, ARF11, A...	indole-3-acetic acid inducible...		Lus10027600 [exp]	12.2	0.8948
AT3G61960			Protein kinase superfamily pro...		Lus10005135 [exp]	12.3	0.8717
AT1G32230		ATP8, CEO1, RCD...	RADICAL-INDUCED CELL DEATH1, A...		Lus10030991 [exp]	12.8	0.9026

Compare expression of checked genes

Lus10023068 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.