Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G10950 163 / 3e-49 SGNH hydrolase-type esterase superfamily protein (.1) AT5G08460 64 / 3e-12 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G41890 57 / 1e-09 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G37690 56 / 2e-09 SGNH hydrolase-type esterase superfamily protein (.1) AT4G16230 55 / 2e-09 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT3G50400 55 / 5e-09 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT2G04570 54 / 6e-09 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G45960 54 / 1e-08 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G74460 53 / 2e-08 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT2G24560 53 / 2e-08 GDSL-like Lipase/Acylhydrolase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001532 [exp] 211 / 3e-67 AT4G10950 544 / 0.0 SGNH hydrolase-type esterase superfamily protein (.1) Lus10026771 [exp] 64 / 3e-12 AT4G10950 199 / 8e-60 SGNH hydrolase-type esterase superfamily protein (.1) Lus10018641 [exp] 62 / 1e-11 AT5G37690 516 / 0.0 SGNH hydrolase-type esterase superfamily protein (.1) Lus10039877 [exp] 62 / 2e-11 AT5G37690 527 / 0.0 SGNH hydrolase-type esterase superfamily protein (.1) Lus10008403 [exp] 62 / 2e-11 AT4G10950 141 / 1e-38 SGNH hydrolase-type esterase superfamily protein (.1) Lus10013956 [exp] 59 / 1e-10 AT5G45950 432 / 6e-152 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10005236 [exp] 59 / 2e-10 AT2G23540 390 / 1e-134 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10005279 [exp] 58 / 4e-10 AT5G45950 427 / 4e-150 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10025105 [exp] 56 / 2e-09 AT5G55050 233 / 2e-73 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G141300 [exp] 173 / 7e-53 AT4G10950 535 / 0.0 SGNH hydrolase-type esterase superfamily protein (.1) Potri.007G062342 [exp] 166 / 4e-52 AT4G10950 337 / 7e-116 SGNH hydrolase-type esterase superfamily protein (.1) Potri.004G086700 [exp] 69 / 7e-14 AT5G37690 527 / 0.0 SGNH hydrolase-type esterase superfamily protein (.1) Potri.017G130100 [exp] 64 / 4e-12 AT5G37690 526 / 0.0 SGNH hydrolase-type esterase superfamily protein (.1) Potri.018G063901 [exp] 61 / 3e-11 AT1G53920 302 / 4e-100 GDSL-motif lipase 5 (.1) Potri.019G008100 [exp] 59 / 1e-10 AT1G29670 356 / 4e-122 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.008G104600 [exp] 59 / 1e-10 AT2G23540 370 / 3e-127 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G008904 [exp] 59 / 2e-10 AT4G18970 246 / 3e-80 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.010G137100 [exp] 58 / 2e-10 AT1G71691 221 / 3e-69 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.019G008906 [exp] 58 / 3e-10 AT1G29670 345 / 1e-117 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10023070 pacid=23170283 polypeptide=Lus10023070 locus=Lus10023070.g ID=Lus10023070.BGIv1.0 annot-version=v1.0 ATGGGAGACACTATGGAGAAAACTATAGTACTCAAGCTCTCTGGCCTTATTCTTCATGATCTCCTTCCTCCTAGCCCTCTGGTCAGAATCTCCTTGACTC ACCAAGTTCAGCAGTTCACTGATTCGTTACAGACATTCATCTTGAACATCGGTGAGAAAGCTACAGAAGAGCTGGTATCTAACTCGGTTGTGTACATATC GATCGGGATCAATGATTACATCCAATACTACCTACCTAACATCTCCAATGTGCAAAATCTCTTCCTCCCCTGGAGTTTCAACCAGTTCTTAGCATCTTTA ATGAGGCAGGAAATTAAGAACTTGTATGGCATGAGTGTGAGGAAAAAGGTGATCATGGGGATGCCTCCTATTGGCTGTGCTCCTCATTACCTGTGGAATT ATATCACGAGTTCAGTGACGCCAAAATCATCTTCTGCGATGTCTATGGAAGTTCGATGGATATCATTAAGAACCATGAGCATTATGATAAGGACATATTT TAGCTCAACTCTCATAGCTATTGTTCCTGTTATTTGA
AA sequence Show only first row Show all	>Lus10023070 pacid=23170283 polypeptide=Lus10023070 locus=Lus10023070.g ID=Lus10023070.BGIv1.0 annot-version=v1.0 MGDTMEKTIVLKLSGLILHDLLPPSPLVRISLTHQVQQFTDSLQTFILNIGEKATEELVSNSVVYISIGINDYIQYYLPNISNVQNLFLPWSFNQFLASL MRQEIKNLYGMSVRKKVIMGMPPIGCAPHYLWNYITSSVTPKSSSAMSMEVRWISLRTMSIMIRTYFSSTLIAIVPVI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G10950			SGNH hydrolase-type esterase s...		Lus10023070 [exp]	0	1
AT4G16295		SPH1	S-protein homologue 1 (.1)		Lus10000558 [exp]	2.6	1.0000
AT3G51590		LTP12	lipid transfer protein 12 (.1)		Lus10004067 [exp]	3.7	1.0000
AT1G17930			Aminotransferase-like, plant m...		Lus10005482 [exp]	4.6	1.0000
					Lus10011636 [exp]	5.3	1.0000
AT3G16970			Plant self-incompatibility pro...		Lus10011753 [exp]	5.9	1.0000
AT4G16295		SPH1	S-protein homologue 1 (.1)		Lus10011892 [exp]	6.5	1.0000
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10022473 [exp]	7.0	1.0000
AT5G37660		PDLP7	plasmodesmata-located protein ...		Lus10015952 [exp]	7.7	1.0000
					Lus10038594 [exp]	7.9	1.0000
AT1G34575			FAD-binding Berberine family p...		Lus10023373 [exp]	8.0	1.0000

Compare expression of checked genes

Lus10023070 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.