Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23930 154 / 6e-48 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1), Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.2) AT1G64450 127 / 1e-35 Glycine-rich protein family (.1) AT2G46150 50 / 2e-07 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT3G54200 49 / 4e-07 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032397 [exp] 149 / 3e-47 AT4G23930 85 / 2e-22 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1), Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.2) Lus10003189 [exp] 150 / 7e-45 AT1G64450 158 / 7e-48 Glycine-rich protein family (.1) Lus10001818 [exp] 80 / 7e-19 AT1G64450 86 / 4e-20 Glycine-rich protein family (.1) Lus10036403 [exp] 50 / 1e-07 AT2G46150 156 / 8e-48 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10018185 [exp] 49 / 2e-07 AT3G54200 153 / 9e-47 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10032671 [exp] 48 / 1e-06 AT3G54200 141 / 1e-41 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10043084 [exp] 47 / 1e-06 AT3G54200 141 / 2e-41 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10025649 [exp] 47 / 2e-06 AT3G54200 152 / 2e-46 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10007904 [exp] 47 / 3e-06 AT2G46150 159 / 1e-48 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G090400 [exp] 207 / 2e-68 AT4G23930 166 / 2e-52 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1), Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.2) Potri.003G141200 [exp] 204 / 3e-67 AT4G23930 176 / 3e-56 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1), Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.2) Potri.006G112800 [exp] 59 / 5e-11 AT3G54200 159 / 7e-49 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.006G112700 [exp] 54 / 4e-09 AT3G05975 127 / 6e-37 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.016G142300 [exp] 54 / 5e-09 AT3G54200 162 / 3e-50 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.003G133400 [exp] 54 / 6e-09 AT2G46150 164 / 7e-51 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.001G098200 [exp] 40 / 0.0002 AT1G64065 102 / 2e-27 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.016G142200 [exp] 40 / 0.0005 AT3G05975 105 / 2e-28 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [flax] [poplar] E-set PF03168 [flax] [poplar] LEA_2 Late embryogenesis abundant protein
Representative CDS sequence Show only first row Show all	>Lus10023071 pacid=23170408 polypeptide=Lus10023071 locus=Lus10023071.g ID=Lus10023071.BGIv1.0 annot-version=v1.0 ATGAGCAAGCCGAATCACAGGCCGAAATCGGGCCGTACGAATCTAGCATCCTGCATAGTCGCCACCATCTTCTTAATCTTCCTAGTCATCGTCCTTCTAA TCGTCTTCTTCACCGTCTTCAAACCAAAAGACCTAAAGATCTCCGTCACCGCCGTCCAGCTCCCGTCCTTCTTTTTAGCACCCAACGCCGTCAACTTCAC CTTCTCCCAGTCCGCCTCCGTCCAAAACCCTAACCGCGCCACCTTCCACCACTACGACAGCACTCTCCAAATCGTCTACTCCGGGTCCCAGGTCGGGTTC ATGTTCATACCCGCCGGCGAAATCGGCGCCGGCCAGACCAAGTACATGGACGCCAGCTTCTCCGTCACGTCCTTCCCCTTGTCGACTCCGACGGCTGCCG TCGGTGGTGGGGTCGGGGCGACGATGGAGATGGAGTCGAGGATTCGGTTTGTGGGTCGGGTTCGGGTGCTGAACTTGTTCTCACACCACGTGGGGGGTAA AACCCGGTGCCGGGTCGCCGTCTCCTTGAGTGATGGATCTGTAATGGGGTTCCATTGCTAG
AA sequence Show only first row Show all	>Lus10023071 pacid=23170408 polypeptide=Lus10023071 locus=Lus10023071.g ID=Lus10023071.BGIv1.0 annot-version=v1.0 MSKPNHRPKSGRTNLASCIVATIFLIFLVIVLLIVFFTVFKPKDLKISVTAVQLPSFFLAPNAVNFTFSQSASVQNPNRATFHHYDSTLQIVYSGSQVGF MFIPAGEIGAGQTKYMDASFSVTSFPLSTPTAAVGGGVGATMEMESRIRFVGRVRVLNLFSHHVGGKTRCRVAVSLSDGSVMGFHC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G64450			Glycine-rich protein family (....		Lus10023071 [exp]	0	1
AT2G31160		OBO1, LSH3	ORGAN BOUNDARY 1, LIGHT SENSIT...		Lus10024901 [exp]	1.0	0.9104
AT2G30620			winged-helix DNA-binding trans...		Lus10005534 [exp]	1.4	0.8827
AT2G47850	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10007941 [exp]	3.6	0.8492
AT5G37930			Protein with RING/U-box and TR...		Lus10009111 [exp]	4.6	0.8665
AT1G32360	C3HZnF		Zinc finger (CCCH-type) family...		Lus10000486 [exp]	6.9	0.8455
AT5G39760	ZF_HD	ATHB23, ZHD10	ZINC FINGER HOMEODOMAIN 10, ho...		Lus10005242 [exp]	9.2	0.8494
AT1G47200		WPP2	WPP domain protein 2 (.1)		Lus10042643 [exp]	10.5	0.8796
AT5G44170			S-adenosyl-L-methionine-depend...		Lus10039876 [exp]	14.0	0.8300
AT3G45980		H2B, HTB9	HISTONE H2B, Histone superfami...		Lus10005897 [exp]	14.6	0.8093
AT3G47620	TCP	AtTCP14, TCP14	"TEOSINTE BRANCHED, cycloidea ...		Lus10013814 [exp]	17.7	0.8252

Compare expression of checked genes

Lus10023071 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.