Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G10955 429 / 9e-151 alpha/beta-Hydrolases superfamily protein (.1.2) AT2G05260 396 / 6e-138 alpha/beta-Hydrolases superfamily protein (.1.2) AT5G24230 328 / 4e-111 Lipase class 3-related protein (.1) AT5G24220 273 / 4e-89 Lipase class 3-related protein (.1) AT5G24180 271 / 2e-88 Lipase class 3-related protein (.1) AT5G24200 236 / 3e-75 alpha/beta-Hydrolases superfamily protein (.1) AT5G24210 184 / 5e-55 alpha/beta-Hydrolases superfamily protein (.1) AT5G50890 155 / 2e-43 alpha/beta-Hydrolases superfamily protein (.1) AT5G24190 140 / 2e-39 Lipase class 3-related protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003188 [exp] 584 / 0 AT4G10955 456 / 7e-162 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10001819 [exp] 577 / 0 AT4G10955 444 / 4e-157 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10018097 [exp] 363 / 6e-125 AT5G24230 357 / 2e-122 Lipase class 3-related protein (.1) Lus10022416 [exp] 270 / 3e-89 AT5G24230 268 / 7e-89 Lipase class 3-related protein (.1) Lus10031455 [exp] 159 / 4e-45 AT5G50890 478 / 4e-169 alpha/beta-Hydrolases superfamily protein (.1) Lus10001506 [exp] 155 / 7e-44 AT5G50890 469 / 1e-165 alpha/beta-Hydrolases superfamily protein (.1) Lus10020755 [exp] 150 / 2e-41 AT5G50890 494 / 5e-175 alpha/beta-Hydrolases superfamily protein (.1) Lus10007331 [exp] 145 / 1e-39 AT5G50890 487 / 6e-172 alpha/beta-Hydrolases superfamily protein (.1) Lus10032396 [exp] 0 / 1 AT4G10955 206 / 3e-102 alpha/beta-Hydrolases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G090500 [exp] 541 / 0 AT4G10955 472 / 9e-168 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.003G141100 [exp] 525 / 0 AT4G10955 464 / 7e-165 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.002G058100 [exp] 159 / 3e-45 AT5G50890 550 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.005G204100 [exp] 156 / 3e-44 AT5G50890 537 / 0.0 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF01764 [flax] [poplar] Lipase_3 Lipase (class 3)
Representative CDS sequence Show only first row Show all	>Lus10023072 pacid=23170374 polypeptide=Lus10023072 locus=Lus10023072.g ID=Lus10023072.BGIv1.0 annot-version=v1.0 ATGGAATCTGAGAGGGAAGTTTTCAACCTCTCAGGACCTCTGCATCTAACCTTCGTTGATTGGTCCGATGCGCATCATCGAAGATCAGTCGCCGCCAGTC TAGTCCAAGGAGTCTACATCCTCGAACGCGACCGTCAGCTCAACCGCCAACCCCCGACATCACTAGCTCCACCATGGTGGGAGTTTTTCCATTTCAAGCT GCTTCGTCAGCTCATCGACGACGTCGATCGCTGCATATTTGGTGCCATATTCGAATACCGGCCTCCTTTTCCAGCATCGTCCCACGGCCATCACTCTTTA GACGCAAGTCCTCGCTACGTTATCGCCTTCCGCGGCACCTTAACCAAGCCGGACTCGTTCGCTCGCGACATTGAGCTCGACCTCCACATCATAAGGAACG GGCTCCACGAGACGTCCCGATTCGAGATAGCAATGCGGGCCGTCCAGAACATGGTCTCCGCTGTGGGCGACTCGAGTGTGTGGCTGGCAGGGCATTCTCT AGGAGCGGCGATGGCAATGCTGGCCGGTAAGACCATGGCCAAGACTGGTACGAGTTTCGTCCAGGCGTTTTTGTTTAACTCGCCGTTCTTCTCCGCACCA ATCGAAAGGATTAAGGACAAGCGTGTCCAGCACGGTATCAGGATTGCCAGCAGTGTGATCACGGCTGGACTTGCATTTGCTTCTTCTAAGAAAAAGAAAA CGGCCAACAACAATAATAATAACGATGGTGGAACCAACGGATCCTCCTCTTCTGTGGATCCGTTTGTGGCTTTGTCGTCATGGATCCCCTGCATCTTTGC GAATGCGGGGGATCCTATATGTTCGGAGTACATTGGGTACTTCGAGCATAGGAAGAAGATGGATGAGATTGGGATCGGAGGGATTGAGAAGCTGGCGACT CAGAATACATTGGGAGGTCTTTTGATGAGTGTCGTCGGGAGGGATTCGGAGCCACTCCACCTCATTCCGTCGGCCATTTTGGCGGTTAATTTGAATCCTT GTCAGGATTTTACAGAAGCACACGGCATTCATCAGTGGTGGAGACCTGATTTGCAGCTCCAATCCAAACTTTACAAGTACAGCTAG
AA sequence Show only first row Show all	>Lus10023072 pacid=23170374 polypeptide=Lus10023072 locus=Lus10023072.g ID=Lus10023072.BGIv1.0 annot-version=v1.0 MESEREVFNLSGPLHLTFVDWSDAHHRRSVAASLVQGVYILERDRQLNRQPPTSLAPPWWEFFHFKLLRQLIDDVDRCIFGAIFEYRPPFPASSHGHHSL DASPRYVIAFRGTLTKPDSFARDIELDLHIIRNGLHETSRFEIAMRAVQNMVSAVGDSSVWLAGHSLGAAMAMLAGKTMAKTGTSFVQAFLFNSPFFSAP IERIKDKRVQHGIRIASSVITAGLAFASSKKKKTANNNNNNDGGTNGSSSSVDPFVALSSWIPCIFANAGDPICSEYIGYFEHRKKMDEIGIGGIEKLAT QNTLGGLLMSVVGRDSEPLHLIPSAILAVNLNPCQDFTEAHGIHQWWRPDLQLQSKLYKYS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G10955			alpha/beta-Hydrolases superfam...		Lus10023072 [exp]	0	1
AT5G51630			Disease resistance protein (TI...		Lus10012028 [exp]	1.4	0.8104
					Lus10008536 [exp]	5.7	0.7583
AT4G37710			VQ motif-containing protein (....		Lus10019270 [exp]	13.1	0.7452
AT5G65750			2-oxoglutarate dehydrogenase, ...		Lus10029463 [exp]	16.7	0.6971
AT3G14470			NB-ARC domain-containing disea...		Lus10008584 [exp]	16.9	0.6646
AT3G61220		SDR1	short-chain dehydrogenase/redu...		Lus10009824 [exp]	18.3	0.7695
AT1G01720	NAC	ATAF1, ANAC002	Arabidopsis NAC domain contain...		Lus10042731 [exp]	19.1	0.7328
AT5G27260			unknown protein		Lus10006034 [exp]	19.8	0.6464
AT5G67480		ATBT4, BT4	BTB and TAZ domain protein 4 (...		Lus10011523 [exp]	22.8	0.7461
AT4G05000		VPS28-2, VPS28-...	vacuolar protein sorting-assoc...		Lus10027228 [exp]	23.5	0.7457

Compare expression of checked genes

Lus10023072 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.