Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G10960 585 / 0 UGE5 UDP-D-glucose/UDP-D-galactose 4-epimerase 5 (.1) AT4G23920 582 / 0 ATUGE2, UGE2 UDP-GLC 4-EPIMERASE 2, UDP-D-glucose/UDP-D-galactose 4-epimerase 2 (.1) AT1G64440 572 / 0 REB1, RHD1, UGE4 UDP-GLUCOSE 4-EPIMERASE, ROOT HAIR DEFECTIVE 1, ROOT EPIDERMAL BULGER1, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G12780 470 / 1e-166 ATUGE1, UGE1 A. THALIANA UDP-GLC 4-EPIMERASE 1, UDP-D-glucose/UDP-D-galactose 4-epimerase 1 (.1) AT1G63180 464 / 3e-164 UGE3 UDP-D-glucose/UDP-D-galactose 4-epimerase 3 (.1) AT5G44480 265 / 9e-85 DUR DEFECTIVE UGE IN ROOT, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G30620 263 / 2e-84 MURUS4, HSR8, UXE1, MUR4 UDP-D-XYLOSE 4-EPIMERASE 1, MURUS 4, HIGH SUGAR RESPONSE8, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) AT4G20460 259 / 4e-83 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G34850 174 / 4e-52 MEE25 maternal effect embryo arrest 25, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G00110 94 / 7e-21 GAE3 UDP-D-glucuronate 4-epimerase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001822 [exp] 626 / 0 AT4G10960 615 / 0.0 UDP-D-glucose/UDP-D-galactose 4-epimerase 5 (.1) Lus10003875 [exp] 616 / 0 AT4G10960 616 / 0.0 UDP-D-glucose/UDP-D-galactose 4-epimerase 5 (.1) Lus10032394 [exp] 605 / 0 AT4G10960 494 / 8e-178 UDP-D-glucose/UDP-D-galactose 4-epimerase 5 (.1) Lus10002246 [exp] 461 / 8e-163 AT1G12780 592 / 0.0 A. THALIANA UDP-GLC 4-EPIMERASE 1, UDP-D-glucose/UDP-D-galactose 4-epimerase 1 (.1) Lus10029572 [exp] 458 / 5e-160 AT1G12780 585 / 0.0 A. THALIANA UDP-GLC 4-EPIMERASE 1, UDP-D-glucose/UDP-D-galactose 4-epimerase 1 (.1) Lus10038423 [exp] 259 / 5e-83 AT1G30620 682 / 0.0 UDP-D-XYLOSE 4-EPIMERASE 1, MURUS 4, HIGH SUGAR RESPONSE8, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10003496 [exp] 229 / 2e-71 AT1G30620 656 / 0.0 UDP-D-XYLOSE 4-EPIMERASE 1, MURUS 4, HIGH SUGAR RESPONSE8, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10013107 [exp] 225 / 5e-70 AT1G30620 652 / 0.0 UDP-D-XYLOSE 4-EPIMERASE 1, MURUS 4, HIGH SUGAR RESPONSE8, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10016640 [exp] 96 / 2e-21 AT3G23820 746 / 0.0 UDP-D-glucuronate 4-epimerase 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G140900 [exp] 591 / 0 AT4G10960 606 / 0.0 UDP-D-glucose/UDP-D-galactose 4-epimerase 5 (.1) Potri.001G090700 [exp] 586 / 0 AT4G10960 607 / 0.0 UDP-D-glucose/UDP-D-galactose 4-epimerase 5 (.1) Potri.003G123700 [exp] 476 / 7e-169 AT1G12780 641 / 0.0 A. THALIANA UDP-GLC 4-EPIMERASE 1, UDP-D-glucose/UDP-D-galactose 4-epimerase 1 (.1) Potri.011G156100 [exp] 260 / 3e-83 AT1G30620 712 / 0.0 UDP-D-XYLOSE 4-EPIMERASE 1, MURUS 4, HIGH SUGAR RESPONSE8, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.006G022000 [exp] 256 / 7e-82 AT1G30620 676 / 0.0 UDP-D-XYLOSE 4-EPIMERASE 1, MURUS 4, HIGH SUGAR RESPONSE8, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.001G459700 [exp] 255 / 2e-81 AT1G30620 730 / 0.0 UDP-D-XYLOSE 4-EPIMERASE 1, MURUS 4, HIGH SUGAR RESPONSE8, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.016G020000 [exp] 249 / 4e-79 AT1G30620 670 / 0.0 UDP-D-XYLOSE 4-EPIMERASE 1, MURUS 4, HIGH SUGAR RESPONSE8, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.001G320000 [exp] 92 / 5e-20 AT3G23820 714 / 0.0 UDP-D-glucuronate 4-epimerase 6 (.1) Potri.017G059100 [exp] 90 / 2e-19 AT3G23820 724 / 0.0 UDP-D-glucuronate 4-epimerase 6 (.1) Potri.003G114600 [exp] 90 / 2e-19 AT4G12250 587 / 0.0 UDP-D-glucuronate 4-epimerase 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01370 [flax] [poplar] Epimerase NAD dependent epimerase/dehydratase family
Representative CDS sequence Show only first row Show all	>Lus10023074 pacid=23170399 polypeptide=Lus10023074 locus=Lus10023074.g ID=Lus10023074.BGIv1.0 annot-version=v1.0 ATGTTGACTTTAATTGGGGAGACAACAAGGTTGAAAATTCTTTCTTGTCGACTACAGAAAGACGGTAGGGGGGAAGGATTATTGATTAAGGAAGGCTTAA TATCCATTTTGGTCACTAATCTATTAAGGCGGAAGCGAATTCTCGTTACCGGCGCCGCCGGCTACATCGGGAGCCACACCGTGCTTCACTTACTCTTAGG CGGCTACATCGCCGTCGTCGTTGACAACCTCGACAACTCCAATCTACTCGCTCTTCAACGAGTCAAGGAGCTCGCCGGCAAGCACGCCAACAACTTGTCT TTCCACCAGGTAGATCTAATGGACAAATGTGCTCTGGAGAAAATTTTCGCTGGGACTAAATTTGATGCTGTCATCCACTTTGCTGGACTGAAAGCAGTCG GCCAGAGTGTTGCGGAACCGTTATTGTATTACAGTAACAATATCACTGGAACCATTAATTTGCTGGAAGTGATGGCTTCCCATGGTTGCAAGAATCTTGT CTTCTCATCATCAGCCACAGTATACGGTTGCCCAAAGGAGGTCCCATGTACAGAAGAATGTCCAATCAGTGCAGTGAACCCATATGGGCGGACCAAGCTT TACGTCGAAGAGATTTGCCGTGATATCCACCATGCAGACTCTAAATGGAGGATTATTTTACTGAGATATTTCAATCCGGTTGGCGCACATCCAAGTGGAA AAATTGGTGAGGATCCACGTGGAACACCGAACAATCTCATGCCCTATGTGCAGCAAGTTGCTGTTGGGAGGAGATCTCACTTAACTGTCTTCGGGACTGA CTACAAGACCAAGGATGGGACCGGGGTACGTGATTTCCTTCACGTTGTGGATTTGGCTGATGGCCACATTGCTGCATTGCGCAAGCTTGATCAACCTAAT ATAGGTTGTGAGGTATACAACTTGGGAACAGGGAAGGGAACATCAGTATTGGAGATGGTTGCAGCATTCGAGAAGGCATCCGGAAAGAAACTTCCTCTAA AAAAGGCTGGGCGACGACCAGGCGATGCTGAGATAGTTTACGCCTCGACAGCCAAGGCCGAACGTGAATTGAATTGGACGGCGAAATACGGGATTGAAGA AATGTGCAGGGACCAATGGAACTGGGCGAGCAACAACCCTTATGGGTACGGATCGGCTGATGCACCCAACGGAACCAAATGA
AA sequence Show only first row Show all	>Lus10023074 pacid=23170399 polypeptide=Lus10023074 locus=Lus10023074.g ID=Lus10023074.BGIv1.0 annot-version=v1.0 MLTLIGETTRLKILSCRLQKDGRGEGLLIKEGLISILVTNLLRRKRILVTGAAGYIGSHTVLHLLLGGYIAVVVDNLDNSNLLALQRVKELAGKHANNLS FHQVDLMDKCALEKIFAGTKFDAVIHFAGLKAVGQSVAEPLLYYSNNITGTINLLEVMASHGCKNLVFSSSATVYGCPKEVPCTEECPISAVNPYGRTKL YVEEICRDIHHADSKWRIILLRYFNPVGAHPSGKIGEDPRGTPNNLMPYVQQVAVGRRSHLTVFGTDYKTKDGTGVRDFLHVVDLADGHIAALRKLDQPN IGCEVYNLGTGKGTSVLEMVAAFEKASGKKLPLKKAGRRPGDAEIVYASTAKAERELNWTAKYGIEEMCRDQWNWASNNPYGYGSADAPNGTK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G10960		UGE5	UDP-D-glucose/UDP-D-galactose ...		Lus10023074 [exp]	0	1
					Lus10012972 [exp]	1.7	0.9232
AT5G67500		VDAC2, ATVDAC2	ARABIDOPSIS THALIANA VOLTAGE D...		Lus10007739 [exp]	8.2	0.9279
AT1G50430		ST7R, PA, LE, 7...	PARVA, LEPIDA, DWARF 5, DELTA5...		Lus10035723 [exp]	9.8	0.9232
AT4G11820		FKP1, EMB2778, ...	FLAKY POLLEN 1, hydroxymethylg...		Lus10002961 [exp]	10.8	0.9043
AT3G28040			Leucine-rich receptor-like pro...		Lus10035687 [exp]	14.0	0.9090
AT4G25050		ACP4	acyl carrier protein 4 (.1.2)		Lus10038635 [exp]	15.2	0.9076
AT3G56130			biotin/lipoyl attachment domai...		Lus10009843 [exp]	17.7	0.9133
AT3G66658		ALDH22A1	aldehyde dehydrogenase 22A1 (....		Lus10037763 [exp]	22.4	0.9078
AT1G10850			Leucine-rich repeat protein ki...		Lus10029075 [exp]	22.5	0.8844
AT2G26700		PID2	PINOID2, AGC (cAMP-dependent, ...		Lus10013715 [exp]	23.0	0.9011

Compare expression of checked genes

Lus10023074 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.