Plant FIBer expression Database

Lus10023075 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G10970 119 / 2e-33 unknown protein
AT4G23910 94 / 7e-24 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10032393
[exp]
186 / 3e-58 AT4G10970 71 / 2e-14 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G140700
[exp]
184 / 7e-59 AT4G10970 127 / 2e-36 unknown protein
Potri.001G090900
[exp]
181 / 1e-57 AT4G10970 127 / 8e-37 unknown protein
PFAM info
Representative CDS sequence
>Lus10023075 pacid=23170428 polypeptide=Lus10023075 locus=Lus10023075.g ID=Lus10023075.BGIv1.0 annot-version=v1.0
ATGGCGGCCCTCAGACCACTCACTCGTGAACAGATCGCCAACACAGAGAAGAAACTCGACATGCCATTAGATGCCATCATTAAACTGTCGAAAACTGCTT
CTATGGGGAAGCCGAACAAGCAATTTAGGGTTCCGAATAAGAACCAGAAGGTGTTCAACAACTCTGCGCAAGGAAAAGCCTTCAAGGTGAATCAATATAT
GGCTTCTCGGCCTTTTGTTAGACAGGGTGCTTTGGCCCAGAGAAGGTCGAATTTTCAGGGGAATCATTTTCCTATTGCGAAAGATTTTGCGCGAAAGGCT
GCAGTTGCTCCCCTTCGCAATAGTAATAGACCTTTCAACAACAATGCGATGCCTAATTCAAACAAAGCAAGGGAAAGATCTTTCATAGTTCAAAGGAGGG
GAGAGAACAGTGCTTTCACTGCAAAGGCACCGCAGAACCAGCAGCAGCAAGGTGATGGTGGCATAAAGCCGAGGACACAAACCCTGGATGCTATGTTTGC
CAACATGAAGGAGCAAAGGACAAGGGTCTTGCAACAGCAGCAGCATCAGAACAATGGCGTACGTCAAATCAATGGTGCACGGCAGAACAATTGGGGACAA
CATCGGAATCCCAACTTCAGCAGACGAGGAGTCCCATGGGCAAGAAACCGATTTGCAAACTGA
AA sequence
>Lus10023075 pacid=23170428 polypeptide=Lus10023075 locus=Lus10023075.g ID=Lus10023075.BGIv1.0 annot-version=v1.0
MAALRPLTREQIANTEKKLDMPLDAIIKLSKTASMGKPNKQFRVPNKNQKVFNNSAQGKAFKVNQYMASRPFVRQGALAQRRSNFQGNHFPIAKDFARKA
AVAPLRNSNRPFNNNAMPNSNKARERSFIVQRRGENSAFTAKAPQNQQQQGDGGIKPRTQTLDAMFANMKEQRTRVLQQQQHQNNGVRQINGARQNNWGQ
HRNPNFSRRGVPWARNRFAN

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G10970 unknown protein Lus10023075
[exp]
0 1
AT2G32080 PUR ALPHA-1, PU... purin-rich alpha 1 (.1.2) Lus10020245
[exp]
1.7 0.9583
AT4G14290 alpha/beta-Hydrolases superfam... Lus10021948
[exp]
2.4 0.9506
AT3G06190 ATBPM2 BTB-POZ and MATH domain 2 (.1.... Lus10041235
[exp]
3.2 0.9472
AT2G44140 Peptidase family C54 protein (... Lus10027079
[exp]
3.2 0.9524
AT5G60900 RLK1 receptor-like protein kinase 1... Lus10009916
[exp]
3.3 0.9427
Lus10040954
[exp]
3.5 0.9423
AT2G29120 ATGLR2.7 GLUTAMATE RECEPTOR 2.7, gluta... Lus10026913
[exp]
4.2 0.9436
AT1G73670 ATMPK15 MAP kinase 15 (.1) Lus10021784
[exp]
4.5 0.9431
AT3G16230 Predicted eukaryotic LigT (.1.... Lus10006828
[exp]
4.9 0.9437
AT3G53500 RSZ32, RS2Z32, ... arginine/serine-rich zinc knuc... Lus10025280
[exp]
5.2 0.9312

Lus10023075 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.