Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G11010 150 / 3e-44 NDPK3 nucleoside diphosphate kinase 3 (.1) AT4G23900 147 / 1e-42 Nucleoside diphosphate kinase family protein (.1) AT4G23895 146 / 3e-40 Pleckstrin homology (PH) domain-containing protein (.1), Pleckstrin homology (PH) domain-containing protein (.2), Pleckstrin homology (PH) domain-containing protein (.3) AT5G63310 94 / 2e-22 NDPK1A, NDPKIAIA, NDPK2, ATNDPK2 NDP KINASE 1A, NUCLEOSIDE DIPHOSPHATE KINASE IA, ARABIDOPSIS NUCLEOSIDE DIPHOSPHATE KINASE 2, nucleoside diphosphate kinase 2 (.1) AT4G09320 87 / 1e-20 NDPK1 Nucleoside diphosphate kinase family protein (.1) AT1G17410 46 / 4e-06 Nucleoside diphosphate kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001824 [exp] 194 / 7e-61 AT4G23900 377 / 4e-134 Nucleoside diphosphate kinase family protein (.1) Lus10032392 [exp] 153 / 9e-46 AT4G11010 328 / 1e-115 nucleoside diphosphate kinase 3 (.1) Lus10003878 [exp] 150 / 7e-44 AT4G23900 362 / 6e-128 Nucleoside diphosphate kinase family protein (.1) Lus10014787 [exp] 94 / 1e-22 AT5G63310 301 / 2e-104 NDP KINASE 1A, NUCLEOSIDE DIPHOSPHATE KINASE IA, ARABIDOPSIS NUCLEOSIDE DIPHOSPHATE KINASE 2, nucleoside diphosphate kinase 2 (.1) Lus10017931 [exp] 94 / 1e-22 AT5G63310 301 / 3e-104 NDP KINASE 1A, NUCLEOSIDE DIPHOSPHATE KINASE IA, ARABIDOPSIS NUCLEOSIDE DIPHOSPHATE KINASE 2, nucleoside diphosphate kinase 2 (.1) Lus10003844 [exp] 89 / 3e-21 AT4G09320 264 / 7e-92 Nucleoside diphosphate kinase family protein (.1) Lus10024286 [exp] 87 / 6e-21 AT4G09320 272 / 3e-95 Nucleoside diphosphate kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G091001 [exp] 167 / 8e-51 AT4G23900 335 / 2e-117 Nucleoside diphosphate kinase family protein (.1) Potri.003G140600 [exp] 140 / 3e-40 AT4G23900 332 / 2e-116 Nucleoside diphosphate kinase family protein (.1) Potri.012G093800 [exp] 96 / 2e-23 AT5G63310 281 / 1e-96 NDP KINASE 1A, NUCLEOSIDE DIPHOSPHATE KINASE IA, ARABIDOPSIS NUCLEOSIDE DIPHOSPHATE KINASE 2, nucleoside diphosphate kinase 2 (.1) Potri.002G138800 [exp] 89 / 1e-21 AT4G09320 271 / 5e-95 Nucleoside diphosphate kinase family protein (.1) Potri.014G049900 [exp] 88 / 4e-21 AT4G09320 242 / 2e-83 Nucleoside diphosphate kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00334 [flax] [poplar] NDK Nucleoside diphosphate kinase
Representative CDS sequence Show only first row Show all	>Lus10023076 pacid=23170427 polypeptide=Lus10023076 locus=Lus10023076.g ID=Lus10023076.BGIv1.0 annot-version=v1.0 ATGAGCTCTCACATCGTCAGATCTGCTTCCAGAGCCGCCAGGTCGCTTCTCTCCTCTGCCTCCAAGGGCTCTCGCTTCTACTCCGAGGGGAGAGCTGCGG CGGCTGCGTTCAGCGGGAAGCTTCCGGTCTTTGCTTCGACCTATGAAAGGACTGGTTCTGCAAGTGCGCATCAATGGATCTCTCACAGCTTCGCGTCTCC TTCCAGAGCCGCCAGGTCGCTTCTCTCCTCTGCCTCCAAGGGCTCTCGCTTCTACTCCGAGGGGAGAGCTGCGGCGGCTGCGTTCAGCGGGAAGCTTCCG GTCTTTGCTTCGACCTATGAAAGGACTGGTTCTGCAAGTGCGCATCAATGGATTTCTGGAGCCCTTGCGGTTCCCGTCGCAGCTTACATGCTCCAAGAAC AGGAGGCCCGTGCTGCAGAGCTGGAGCGCACCTTTATTGCAATCAAGCCTGATGGAGTCCAGAGAGGGCTGGTATGGGAAGGAGAAGGTGCGATAAAATA TGGCAGGAAACTGATCGGAGCAACAGATCCTCAGAAATCCGAACCAGGAACGATCAGAGGTGACCTGGCTGTTGTTGTTGGAAGGAACATCATTCACGGA AGCGATGGCCCAGAAACCGCAAAGGACGAGATCAAGTTGTGGTTCAAGCCAGAGGAGTTGGTTACCTACACGAGCAATTCCGAGAATTGTGAATCTAAGA TGGTACTCGAAGATGGAACATCAGGTTTGGAGGAAAGTGATCAGGAAGAGATGGCGCAAGCGAAACTGGTTCCGACGCCTCCACCATGGGAGTACAAGTG CAAACCGTCGAAGTCTCCTAAAAAAGATGGCTCAGGCATGACAATCGGAACACATGCAGGTCAAGTCAACGCGGTGACAGCACCCCAATCGAAGCACCCA CCCCAAAGTTAA
AA sequence Show only first row Show all	>Lus10023076 pacid=23170427 polypeptide=Lus10023076 locus=Lus10023076.g ID=Lus10023076.BGIv1.0 annot-version=v1.0 MSSHIVRSASRAARSLLSSASKGSRFYSEGRAAAAAFSGKLPVFASTYERTGSASAHQWISHSFASPSRAARSLLSSASKGSRFYSEGRAAAAAFSGKLP VFASTYERTGSASAHQWISGALAVPVAAYMLQEQEARAAELERTFIAIKPDGVQRGLVWEGEGAIKYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHG SDGPETAKDEIKLWFKPEELVTYTSNSENCESKMVLEDGTSGLEESDQEEMAQAKLVPTPPPWEYKCKPSKSPKKDGSGMTIGTHAGQVNAVTAPQSKHP PQS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G23900			Nucleoside diphosphate kinase ...		Lus10023076 [exp]	0	1
AT2G26650		AKT1, ATAKT1	K+ transporter 1, K+ transport...		Lus10017765 [exp]	4.9	0.8218
AT5G28840		GME	"GDP-D-mannose 3',5'-epimerase...		Lus10020247 [exp]	8.8	0.8005
AT2G26650		AKT1, ATAKT1	K+ transporter 1, K+ transport...		Lus10033052 [exp]	9.9	0.8006
AT2G24400			SAUR-like auxin-responsive pro...		Lus10033348 [exp]	12.2	0.7841
AT1G33760	AP2_ERF		Integrase-type DNA-binding sup...		Lus10003513 [exp]	13.0	0.7775
					Lus10028607 [exp]	14.5	0.7811
AT5G40780		LHT1, LTH1	lysine histidine transporter 1...		Lus10032074 [exp]	20.1	0.7735
AT5G25840			Protein of unknown function (D...		Lus10000571 [exp]	21.0	0.7627
AT3G28345		MDR13, ABCB15	multi-drug resistance 13, ATP-...		Lus10012959 [exp]	21.8	0.7401
AT4G17970		ATALMT12, ALMT1...	"aluminum-activated, malate tr...		Lus10030975 [exp]	25.5	0.7649

Compare expression of checked genes

Lus10023076 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.