Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12250 213 / 2e-65 GAE5 UDP-D-glucuronate 4-epimerase 5 (.1) AT4G00110 203 / 2e-61 GAE3 UDP-D-glucuronate 4-epimerase 3 (.1) AT1G02000 202 / 3e-61 GAE2 UDP-D-glucuronate 4-epimerase 2 (.1) AT2G45310 197 / 4e-59 GAE4 UDP-D-glucuronate 4-epimerase 4 (.1) AT4G30440 194 / 4e-58 GAE1 UDP-D-glucuronate 4-epimerase 1 (.1) AT3G23820 188 / 2e-55 GAE6 UDP-D-glucuronate 4-epimerase 6 (.1) AT1G12780 59 / 1e-09 ATUGE1, UGE1 A. THALIANA UDP-GLC 4-EPIMERASE 1, UDP-D-glucose/UDP-D-galactose 4-epimerase 1 (.1) AT4G23920 59 / 1e-09 ATUGE2, UGE2 UDP-GLC 4-EPIMERASE 2, UDP-D-glucose/UDP-D-galactose 4-epimerase 2 (.1) AT1G63180 57 / 7e-09 UGE3 UDP-D-glucose/UDP-D-galactose 4-epimerase 3 (.1) AT4G10960 54 / 6e-08 UGE5 UDP-D-glucose/UDP-D-galactose 4-epimerase 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032391 [exp] 309 / 3e-102 AT1G02000 620 / 0.0 UDP-D-glucuronate 4-epimerase 2 (.1) Lus10000787 [exp] 216 / 4e-66 AT4G00110 731 / 0.0 UDP-D-glucuronate 4-epimerase 3 (.1) Lus10009288 [exp] 207 / 3e-63 AT4G00110 704 / 0.0 UDP-D-glucuronate 4-epimerase 3 (.1) Lus10015876 [exp] 208 / 4e-63 AT4G00110 751 / 0.0 UDP-D-glucuronate 4-epimerase 3 (.1) Lus10030281 [exp] 207 / 6e-63 AT4G00110 753 / 0.0 UDP-D-glucuronate 4-epimerase 3 (.1) Lus10008893 [exp] 196 / 1e-58 AT4G30440 767 / 0.0 UDP-D-glucuronate 4-epimerase 1 (.1) Lus10031127 [exp] 194 / 3e-58 AT4G00110 574 / 0.0 UDP-D-glucuronate 4-epimerase 3 (.1) Lus10019967 [exp] 192 / 1e-57 AT4G30440 688 / 0.0 UDP-D-glucuronate 4-epimerase 1 (.1) Lus10015496 [exp] 193 / 2e-57 AT4G30440 764 / 0.0 UDP-D-glucuronate 4-epimerase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G114600 [exp] 233 / 8e-73 AT4G12250 587 / 0.0 UDP-D-glucuronate 4-epimerase 5 (.1) Potri.014G068400 [exp] 209 / 7e-64 AT1G02000 714 / 0.0 UDP-D-glucuronate 4-epimerase 2 (.1) Potri.002G146500 [exp] 209 / 9e-64 AT1G02000 724 / 0.0 UDP-D-glucuronate 4-epimerase 2 (.1) Potri.012G128200 [exp] 195 / 8e-59 AT1G02000 544 / 0.0 UDP-D-glucuronate 4-epimerase 2 (.1) Potri.001G320000 [exp] 196 / 1e-58 AT3G23820 714 / 0.0 UDP-D-glucuronate 4-epimerase 6 (.1) Potri.017G059100 [exp] 196 / 2e-58 AT3G23820 724 / 0.0 UDP-D-glucuronate 4-epimerase 6 (.1) Potri.018G100400 [exp] 187 / 2e-55 AT4G30440 771 / 0.0 UDP-D-glucuronate 4-epimerase 1 (.1) Potri.006G178500 [exp] 187 / 2e-55 AT4G30440 757 / 0.0 UDP-D-glucuronate 4-epimerase 1 (.1) Potri.002G116750 [exp] 154 / 6e-46 AT2G45310 209 / 6e-67 UDP-D-glucuronate 4-epimerase 4 (.1) Potri.003G123700 [exp] 66 / 1e-11 AT1G12780 641 / 0.0 A. THALIANA UDP-GLC 4-EPIMERASE 1, UDP-D-glucose/UDP-D-galactose 4-epimerase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01370 [flax] [poplar] Epimerase NAD dependent epimerase/dehydratase family
Representative CDS sequence Show only first row Show all	>Lus10023077 pacid=23170345 polypeptide=Lus10023077 locus=Lus10023077.g ID=Lus10023077.BGIv1.0 annot-version=v1.0 ATGGCCTCTTTGCTAATCGACAACAGTCCACCGTCAACACCGGGAAAATTCAAGCAGGACAAAGCCTCGTCGTACCTCCACCACCACCACCGCTCCCTCC GCCTACAATCGAACATATCGAAGCTAACTTTCTACTCCTTCCTCTTCCTAATCCTCTTCCTTTTCCTCTTCCTCCTCTCCCCTCCCTCCTCCTCCGCTTC CCCCCGCCGCCACCTCACCTCGTCCGACCTCCCCGGCGGCCGCCACTGGGAGAAGAAGGTCCTTAAGTCAACCACCCCCAAATCCGCCGGCTGCTTCACC GTCCTGGTCACCGGTGCCGCTGGCTTCGTCGGCACGCACGTCTCTGTCGCCCTCAAGCACCGCGGCGACGGCGTTCTTGGCCTCGATAACTTCAACGCCT ACTACGACACCGATCTCAAGCACTCCCGCCGCAAGGTCCTCGAGCGCACCGGAATCTTCGTCGTCGAAGGGGACATCAACGACTCCGATCTGCTGAAGAA GCTCTTCGATGTCGTCTACTTCACGCACGTCATGCATTTAGCCGCTCAGGCAGGCGTACGGTACGCGTTGCAAAACCCTAATTCCTATGTCCATAGCAAC ATCGCAGGGTTTGTGAGTTTGTTAGAGGTCTACATGGCCTACTTCTTCTTCACTAAGGATATGCTGGAAGGGAAAGAGATCAGCTTGTATCAAACTAGAG ATGGGAGAAGTGTAGCCAGAGATTTCACCTACATTGATGACATCGTGAAAGGCTGTTTGGCCGCGATCGATACAGCGAAGAAGAGTACCGGAAGTGGGGG GAAGAAGAAAGGTCCAGCTCAGTTGAGGATCTACAATCTGGGGAACACTTCCCCTGTTCCGATGACGAAGATGGTGAGCATATTGGAGAAGCTTCTGAAA GTTAAAGCGAAGAAGAAAGCTCAGCCTTTGCCTAGAAATGGAGATGTGCCCTTCACTCATGCTAATATCAGCTTGGCACATAAGGAGCTTGGGTATAAGC CGACTACTGATTTGGAATCAGGGCTTAAGAAGTTTGTAAGGTGGTACAATGATTACTACTCGAAGAACAAGAGTTCTTTCTCATTGTGA
AA sequence Show only first row Show all	>Lus10023077 pacid=23170345 polypeptide=Lus10023077 locus=Lus10023077.g ID=Lus10023077.BGIv1.0 annot-version=v1.0 MASLLIDNSPPSTPGKFKQDKASSYLHHHHRSLRLQSNISKLTFYSFLFLILFLFLFLLSPPSSSASPRRHLTSSDLPGGRHWEKKVLKSTTPKSAGCFT VLVTGAAGFVGTHVSVALKHRGDGVLGLDNFNAYYDTDLKHSRRKVLERTGIFVVEGDINDSDLLKKLFDVVYFTHVMHLAAQAGVRYALQNPNSYVHSN IAGFVSLLEVYMAYFFFTKDMLEGKEISLYQTRDGRSVARDFTYIDDIVKGCLAAIDTAKKSTGSGGKKKGPAQLRIYNLGNTSPVPMTKMVSILEKLLK VKAKKKAQPLPRNGDVPFTHANISLAHKELGYKPTTDLESGLKKFVRWYNDYYSKNKSSFSL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G02000		GAE2	UDP-D-glucuronate 4-epimerase ...		Lus10023077 [exp]	0	1
AT1G18390			Protein kinase superfamily pro...		Lus10029132 [exp]	4.5	0.8676
AT5G44800		PKR1, CHR4, MI-...	PICKLE RELATED 1, chromatin re...		Lus10036224 [exp]	8.2	0.8177
AT1G20225			Thioredoxin superfamily protei...		Lus10017254 [exp]	10.7	0.8522
AT2G15480		UGT73B5	UDP-glucosyl transferase 73B5 ...		Lus10019835 [exp]	12.0	0.7928
AT2G48010		RKF3	receptor-like kinase in in flo...		Lus10029624 [exp]	13.4	0.8013
AT2G16770	bZIP	bZIP23	Basic-leucine zipper (bZIP) tr...		Lus10019788 [exp]	14.0	0.8454
					Lus10010742 [exp]	14.5	0.8192
AT5G54650		ATFH5, Fh5	FORMIN HOMOLOGY 5, formin homo...		Lus10036609 [exp]	24.9	0.8398
AT2G23140			RING/U-box superfamily protein...		Lus10011514 [exp]	25.8	0.8101
AT4G36830		HOS3-1	GNS1/SUR4 membrane protein fam...		Lus10018796 [exp]	28.1	0.7827

Compare expression of checked genes

Lus10023077 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.