Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64670 281 / 2e-94 Ribosomal protein L18e/L15 superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032390 [exp] 394 / 1e-138 AT5G64670 385 / 9e-136 Ribosomal protein L18e/L15 superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G324300 [exp] 297 / 6e-101 AT5G64670 323 / 1e-111 Ribosomal protein L18e/L15 superfamily protein (.1) Potri.016G002400 [exp] 296 / 1e-100 AT5G64670 315 / 1e-108 Ribosomal protein L18e/L15 superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0588 [flax] [poplar] Ribos_L15p_L18e PF00828 [flax] [poplar] Ribosomal_L27A Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
Representative CDS sequence Show only first row Show all	>Lus10023078 pacid=23170391 polypeptide=Lus10023078 locus=Lus10023078.g ID=Lus10023078.BGIv1.0 annot-version=v1.0 ATGATCGCGAGGAAGCGATTATTTTCTTCCCTGTTCTCATCGACATCCCTTATCAATCGGATAACCAACCACCCAAACCCCCCTGCCTCAACTCTCATCC CAGTCCCGCTATTTCAATCCCTGCAACGTCCCGGAGGCGGCGGCTATGGGGCATCTGGGTTGTTTATCGGCAGTGTTCGAAACTGCAGCTTGTTAAAGCT GAATGATTTGAGGGACATCATACCAAGGAAGCTGAAGACCAGGAAAGGGCGTGGGATTGGGTCTGGTAAAGGAAAGACTGCTGGAAGAGGTCATAAAGGT CAGAAAGCTAGAGGTACTTATAAGTTTGGGTTCGAAGGTGGTCAGACTCCCTTGCGCCGCCGTCTTCCCAAGAGAGGATTTAAGAACCCCTTTAGCCTCA CTTTCCAGCCAGTGGGGTTGGGAAAGATTGCAAGACTTATAAATGCTGGGAAGATCGATTCGCATGAGTTGATTACAATGAAAACACTCAAGGATACTGG GGCCATCGGAAAGCAGATAGAAGATGGAGTGAGACTGATGGGGCGTGGTCTTGAGCACATCCAGTGGCCTATCCATCTAGAGGACGACCTTGTGCTTACG AGACTAAGGGTTTTGCAGGTATCGAGGGTGACAGTTAGAGCCAAGGCAGCAGTAGAAGCAATGGGAGGAACAGTGAGGCGGGTGCATTACAACAAGCTGG GATTCCGAGCACTGCTGAAGCCAGAGTGGTTCGAGAAGAAAGGAAGGTTGCTGCCAAAGCCAGCTAGACCTCCTCCAAAGCTGAAGCACAAAGTCGATAG CATTGGCAGATTGCCAGCACCAAACAAACCGATCCCATTCTACATCGAAGAGGAGGCAGCTGAAGATGCTGTCGGGGTTGAACCTCCTCCCCAGCCCATT AGTGTTTGA
AA sequence Show only first row Show all	>Lus10023078 pacid=23170391 polypeptide=Lus10023078 locus=Lus10023078.g ID=Lus10023078.BGIv1.0 annot-version=v1.0 MIARKRLFSSLFSSTSLINRITNHPNPPASTLIPVPLFQSLQRPGGGGYGASGLFIGSVRNCSLLKLNDLRDIIPRKLKTRKGRGIGSGKGKTAGRGHKG QKARGTYKFGFEGGQTPLRRRLPKRGFKNPFSLTFQPVGLGKIARLINAGKIDSHELITMKTLKDTGAIGKQIEDGVRLMGRGLEHIQWPIHLEDDLVLT RLRVLQVSRVTVRAKAAVEAMGGTVRRVHYNKLGFRALLKPEWFEKKGRLLPKPARPPPKLKHKVDSIGRLPAPNKPIPFYIEEEAAEDAVGVEPPPQPI SV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G64670			Ribosomal protein L18e/L15 sup...		Lus10023078 [exp]	0	1
AT3G51010			unknown protein		Lus10042347 [exp]	3.3	0.9429
AT5G13780			Acyl-CoA N-acyltransferases (N...		Lus10016378 [exp]	3.5	0.9533
AT5G35530			Ribosomal protein S3 family pr...		Lus10030502 [exp]	4.1	0.9567
AT3G57150		ATNAP57, ATCBF5...	homologue of NAP57 (.1)		Lus10023565 [exp]	4.9	0.9564
AT4G00930		CIP4.1	COP1-interacting protein 4.1 (...		Lus10011397 [exp]	6.0	0.9433
AT5G20600			unknown protein		Lus10027609 [exp]	6.0	0.9509
AT1G76820			eukaryotic translation initiat...		Lus10012856 [exp]	8.9	0.9452
AT4G27070		TSB2	tryptophan synthase beta-subun...		Lus10011154 [exp]	9.2	0.9388
AT5G14050			Transducin/WD40 repeat-like su...		Lus10036236 [exp]	9.3	0.9300
AT3G53630			unknown protein		Lus10003983 [exp]	9.4	0.9344

Compare expression of checked genes

Lus10023078 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.