Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18990 62 / 5e-11 B3 REM39, VRN1 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) AT4G31690 59 / 6e-10 B3 REM9 Transcriptional factor B3 family protein (.1) AT4G31640 56 / 4e-09 B3 REM5 transcriptional factor B3 family protein (.1) AT1G49480 53 / 3e-08 B3 REM19, RTV1 related to vernalization1 1 (.1) AT1G49475 49 / 7e-07 B3 AP2/B3-like transcriptional factor family protein (.1) AT3G18960 47 / 3e-06 B3 AP2/B3-like transcriptional factor family protein (.1) AT4G01580 46 / 4e-06 B3 AP2/B3-like transcriptional factor family protein (.1) AT4G33280 45 / 1e-05 B3 REM16 AP2/B3-like transcriptional factor family protein (.1) AT4G31680 45 / 2e-05 B3 REM8 Transcriptional factor B3 family protein (.1) AT5G18000 41 / 0.0003 B3 VDD VERDANDI (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032389 [exp] 207 / 2e-68 AT3G18990 56 / 6e-10 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10014359 [exp] 110 / 4e-29 AT3G18990 79 / 1e-16 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10026067 [exp] 108 / 3e-28 AT3G18990 76 / 6e-16 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10036045 [exp] 95 / 9e-23 AT3G18990 110 / 2e-27 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10038189 [exp] 92 / 5e-22 AT3G18990 82 / 8e-19 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10025913 [exp] 90 / 2e-21 AT3G18990 81 / 2e-18 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10025534 [exp] 90 / 2e-21 AT3G18990 81 / 2e-18 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10009688 [exp] 89 / 1e-20 AT3G18990 113 / 2e-28 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10010080 [exp] 84 / 7e-19 AT4G31680 75 / 8e-16 Transcriptional factor B3 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G230100 [exp] 71 / 8e-14 AT3G18990 161 / 1e-44 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.004G147000 [exp] 67 / 1e-12 AT3G18990 258 / 3e-83 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.010G191500 [exp] 64 / 1e-11 AT3G18990 189 / 5e-57 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.014G057101 [exp] 58 / 5e-10 AT3G18990 76 / 5e-16 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.009G108500 [exp] 57 / 2e-09 AT3G18990 395 / 2e-137 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.004G147200 [exp] 54 / 2e-08 AT1G49480 110 / 5e-28 related to vernalization1 1 (.1) Potri.014G036800 [exp] 51 / 2e-07 AT3G18990 92 / 3e-20 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.007G035700 [exp] 49 / 6e-07 AT4G01580 71 / 4e-15 AP2/B3-like transcriptional factor family protein (.1) Potri.004G146900 [exp] 45 / 1e-05 AT3G18990 353 / 6e-121 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.007G035500 [exp] 43 / 0.0001 AT5G66980 102 / 4e-25 AP2/B3-like transcriptional factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0405 [flax] [poplar] DNA_b-psBarrel PF02362 [flax] [poplar] B3 B3 DNA binding domain
Representative CDS sequence Show only first row Show all	>Lus10023079 pacid=23170329 polypeptide=Lus10023079 locus=Lus10023079.g ID=Lus10023079.BGIv1.0 annot-version=v1.0 ATGGAAAGGGTGGTTCGTTTCCCCAAGGTGGTCATTGGAGAGAGTCTGCAAGCCAAGAAACTGATGCTTCCCAAGAGTTTCACCAGATCCTACTGGGGGA ATGCGCCAACTCGAGCTACTCTCCTTCTCCCAGGACGTGGGAGGTGGGAAATGGAGGTGTTCGAGGATGACCGTTCTCGTGTGTGGCTACAAGGCGCTGG CTGGGAAGCCTTTGCAAGATTCTACTCCCTGGCTCACGGTTACATCCTTCAGTTCAAATACCGTGGAGGTACCAAGTTCTTCGTTCGTGTCTTCTCTCTG AATTGCTCGGAGATTAAGTATCCTCCTCCAGATCTTAGAAGCCTGGATGTAGAAGATGATCCGGTTGATGATTCTGATGATGATGAAGAACTCCCAGTCC AGTCTGAGCTTCCTTTCTTTGAGGCTACCTTGTCTACATCTCACTTCAAGTACTTTCAGGCGCATATACCAAGGAGGTTCTCCAAGAAGTACATTGCTGA GAGTGATCAGAGTGTGACACTCAAGATGGGCAACCAGGCTTGGGATGTGAACCTGAACCGACAAGGAGGGGAGACTAGGTACCCGAAGTTGAGCGCTGGA TGGACCGAGTTTTCGAGAGACAATTCTCTGAGGGTTGGGGATAAGTGCGTGTTTCAGCTGCTGCGCAAGGTTCCTCATGTTCTTTATTTCGAGGTGAAGA TAGTTAGGGCTGATTAG
AA sequence Show only first row Show all	>Lus10023079 pacid=23170329 polypeptide=Lus10023079 locus=Lus10023079.g ID=Lus10023079.BGIv1.0 annot-version=v1.0 MERVVRFPKVVIGESLQAKKLMLPKSFTRSYWGNAPTRATLLLPGRGRWEMEVFEDDRSRVWLQGAGWEAFARFYSLAHGYILQFKYRGGTKFFVRVFSL NCSEIKYPPPDLRSLDVEDDPVDDSDDDEELPVQSELPFFEATLSTSHFKYFQAHIPRRFSKKYIAESDQSVTLKMGNQAWDVNLNRQGGETRYPKLSAG WTEFSRDNSLRVGDKCVFQLLRKVPHVLYFEVKIVRAD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10023079 [exp]	0	1
AT5G26150			protein kinase family protein ...		Lus10024998 [exp]	5.9	0.8442
AT2G22180			hydroxyproline-rich glycoprote...		Lus10000688 [exp]	8.4	0.8442
					Lus10000824 [exp]	10.2	0.8442
AT2G33470		ATGLTP1, GLTP1	ARABIDOPSIS GLYCOLIPID TRANSFE...		Lus10003626 [exp]	11.8	0.8442
					Lus10011629 [exp]	13.2	0.8442
AT5G56680		SYNC1ARATH, SYN...	EMBRYO DEFECTIVE 2755, Class I...		Lus10008180 [exp]	13.3	0.7022
					Lus10029832 [exp]	14.5	0.8442
					Lus10033178 [exp]	15.7	0.8442
					Lus10017842 [exp]	16.7	0.8442
AT1G22450		ATCOX6B2, COX6B	CYTOCHROME C OXIDASE 6B2, cyto...		Lus10040123 [exp]	17.7	0.8442

Compare expression of checked genes

Lus10023079 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.