Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G22250 631 / 0 ATAAT, AAT, MEE17 MATERNAL EFFECT EMBRYO ARREST 17, aspartate aminotransferase (.1.2.3) AT1G77670 180 / 3e-51 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT1G80360 129 / 5e-33 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT4G28420 90 / 3e-19 Tyrosine transaminase family protein (.1.2) AT5G53970 88 / 1e-18 TAT7 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) AT2G20610 85 / 2e-17 RTY1, RTY, HLS3, ALF1, SUR1 SUPERROOT 1, ROOTY 1, ROOTY, HOOKLESS 3, ABERRANT LATERAL ROOT FORMATION 1, Tyrosine transaminase family protein (.1.2) AT5G36160 85 / 2e-17 Tyrosine transaminase family protein (.1) AT2G24850 82 / 1e-16 TAT3 tyrosine aminotransferase 3 (.1) AT4G23600 81 / 4e-16 JR2, CORI3, TAT1 JASMONIC ACID RESPONSIVE 2, CORONATINE INDUCED 1, Tyrosine transaminase family protein (.1.2.3) AT4G28410 77 / 5e-15 Tyrosine transaminase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032388 [exp] 879 / 0 AT2G22250 681 / 0.0 MATERNAL EFFECT EMBRYO ARREST 17, aspartate aminotransferase (.1.2.3) Lus10004089 [exp] 174 / 7e-49 AT1G77670 685 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10014710 [exp] 171 / 2e-48 AT1G77670 680 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10018962 [exp] 158 / 5e-43 AT1G77670 289 / 2e-93 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10023117 [exp] 112 / 4e-27 AT1G80360 593 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10033659 [exp] 112 / 7e-27 AT5G36160 481 / 3e-169 Tyrosine transaminase family protein (.1) Lus10017703 [exp] 106 / 9e-25 AT2G20610 486 / 1e-170 SUPERROOT 1, ROOTY 1, ROOTY, HOOKLESS 3, ABERRANT LATERAL ROOT FORMATION 1, Tyrosine transaminase family protein (.1.2) Lus10017934 [exp] 100 / 2e-22 AT5G53970 619 / 0.0 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Lus10039861 [exp] 98 / 9e-22 AT2G20610 509 / 1e-179 SUPERROOT 1, ROOTY 1, ROOTY, HOOKLESS 3, ABERRANT LATERAL ROOT FORMATION 1, Tyrosine transaminase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G079200 [exp] 717 / 0 AT2G22250 649 / 0.0 MATERNAL EFFECT EMBRYO ARREST 17, aspartate aminotransferase (.1.2.3) Potri.007G088426 [exp] 715 / 0 AT2G22250 643 / 0.0 MATERNAL EFFECT EMBRYO ARREST 17, aspartate aminotransferase (.1.2.3) Potri.005G175400 [exp] 175 / 4e-49 AT1G77670 728 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.002G086000 [exp] 171 / 8e-48 AT1G77670 726 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.014G124100 [exp] 160 / 3e-44 AT1G77670 289 / 6e-94 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.001G177000 [exp] 119 / 3e-29 AT1G80360 573 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.017G014100 [exp] 103 / 1e-23 AT5G53970 528 / 0.0 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Potri.017G014000 [exp] 99 / 3e-22 AT5G53970 520 / 0.0 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Potri.017G013900 [exp] 97 / 1e-21 AT5G53970 521 / 0.0 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Potri.017G013800 [exp] 95 / 6e-21 AT5G36160 520 / 0.0 Tyrosine transaminase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [flax] [poplar] PLP_aminotran PF00155 [flax] [poplar] Aminotran_1_2 Aminotransferase class I and II
Representative CDS sequence Show only first row Show all	>Lus10023080 pacid=23170280 polypeptide=Lus10023080 locus=Lus10023080.g ID=Lus10023080.BGIv1.0 annot-version=v1.0 ATGGCTGCTTCTCTGCAAGGTTCCACACCTGCCGTTTCCTGTCATCTGGCTCCGACTCACCCTCCTGCTACACATTTCTCTGGAAAATCCGTTTCATTCG CTTCTCAGCCTCTTATTTTCAACCTCAAGTCAGCGGAGAGTACAAAGCTAGGACGTTTCTCCAGAACAAAAGCCATGGCTAAGCTTGATAGTACTTCTAA GCCTGTGGAATTGGACATCTCTTTGAGCCCCAGAGTGAATTCCGTAAAACCATCGAAAACCGTGGCCATTACGGATCAGGCAACTGCTCTTGCAGAAGCT GGTGTTCCTGTCATTAGGTTGGCTGCTGGAGAACCTGATTTCGATACACCAGCTGTGATAGCTGAGGCTGGAATCAATGCTATCCGTGAAGGTTATACAA GATATTCCCCTAATGCCGGCACGATGGAGTTACGGAGTGCAATATGTAAGAAGCTCAAAGAGGAAAATGGTCTCTCTTATACACCGGATCAAGTTCTAGT TAGCAATGGAGCCAAGCAGAGTATCATTCAAGCCGTGCTTGCAGTTTGTTCCCCCGGCGATGAGGTTGTAATTCCGGCACCATTTTGGGTTAGTTACCCA GAAATGGCAAGATTGGCTGATGCAACTCCTGTGATTCTTCCAACCTCTATTTCTGAGAACTTCCTGTTGGATCCAAAGCTGCTTGAATCCAAACTTACCG AGAAGTCGAGACTATTGATACTTTGCTCACCATCTAACCCGACAGGATCTGTTTATCCGAAAGAATTGCTTGAAGAGATTGCAAAAATTGTAGCAAAACA TCCTAGACTTCTGGTTCTGTCTGACGAAATATACGAGCACATAATATATAAACCTGTCAAGCATACAAGCTTTGCGTCTTTGCCTGGCATGTGGGAGAGG ACACTTACAGTAAATGGATTCTCAAAGGCTTTTGCCATGACTGGATGGAGACTTGGATATATTGCTGGACCGAAGCATTTTGTGGCTGCATGTAATAAGA TACAAAGCCAGTCAACTTCTGGTGCGAGCAGTATCTCGCAAAAGGCGGCAGTTGCTGCGTTAGGACTAGGATATGCCGGTGGGGAAGCAGTAGCTACAAT GGTGAAAGCATTCAGGGAGCGTCGGGACTTCTTGGTCAAAAACTTTGGAGAGATCCAAGGGGTGAAGATCTCCGAACCTCAGGGTGCATTCTATTTGTTC ATTGATTTCAGCTCATACTTTGGATCATCAGTTGAAGGTTTTGGTAAAATTGAAGACTCTGAGTCCCTTTGCAGATACCTGTTAGACAAAGCACAGGTCG CCCTAGTTCCCGGGGTTGCGTTCGGAGATGACACGTGCATAAGGATCTCGTATGCTGCTTCCCTCGCAACATTAGAGGCGGCTGTAGAAAGGATCAAGAA GGCGATCCTAGTTCTGAAGCCTGCTGTTCCTGTTTGA
AA sequence Show only first row Show all	>Lus10023080 pacid=23170280 polypeptide=Lus10023080 locus=Lus10023080.g ID=Lus10023080.BGIv1.0 annot-version=v1.0 MAASLQGSTPAVSCHLAPTHPPATHFSGKSVSFASQPLIFNLKSAESTKLGRFSRTKAMAKLDSTSKPVELDISLSPRVNSVKPSKTVAITDQATALAEA GVPVIRLAAGEPDFDTPAVIAEAGINAIREGYTRYSPNAGTMELRSAICKKLKEENGLSYTPDQVLVSNGAKQSIIQAVLAVCSPGDEVVIPAPFWVSYP EMARLADATPVILPTSISENFLLDPKLLESKLTEKSRLLILCSPSNPTGSVYPKELLEEIAKIVAKHPRLLVLSDEIYEHIIYKPVKHTSFASLPGMWER TLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQSTSGASSISQKAAVAALGLGYAGGEAVATMVKAFRERRDFLVKNFGEIQGVKISEPQGAFYLF IDFSSYFGSSVEGFGKIEDSESLCRYLLDKAQVALVPGVAFGDDTCIRISYAASLATLEAAVERIKKAILVLKPAVPV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G22250		ATAAT, AAT, MEE...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10023080 [exp]	0	1
AT3G27880			Protein of unknown function (D...		Lus10014541 [exp]	3.5	0.8439
AT2G30490		REF3, CYP73A5, ...	REDUCED EPRDERMAL FLUORESCENCE...		Lus10021671 [exp]	4.4	0.8540
AT1G77580			Plant protein of unknown funct...		Lus10012712 [exp]	8.0	0.8192
AT2G22250		ATAAT, AAT, MEE...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10032388 [exp]	10.1	0.8366
AT2G19940			oxidoreductases, acting on the...		Lus10034096 [exp]	13.6	0.7622
AT2G32720		B5 #4, B5#4, AT...	ARABIDOPSIS CYTOCHROME B5 ISOF...		Lus10011858 [exp]	15.0	0.8262
AT4G30210		AR2, ATR2	P450 reductase 2 (.1.2)		Lus10019996 [exp]	16.2	0.7747
AT4G16760		ATACX1, ACX1	acyl-CoA oxidase 1 (.1.2)		Lus10007815 [exp]	17.5	0.7560
AT5G46080			Protein kinase superfamily pro...		Lus10025455 [exp]	21.3	0.8297
AT5G13420			Aldolase-type TIM barrel famil...		Lus10043136 [exp]	22.4	0.8207

Compare expression of checked genes

Lus10023080 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.