Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23895 278 / 2e-94 Pleckstrin homology (PH) domain-containing protein (.1), Pleckstrin homology (PH) domain-containing protein (.2), Pleckstrin homology (PH) domain-containing protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032387 [exp] 448 / 1e-161 AT4G23895 308 / 3e-106 Pleckstrin homology (PH) domain-containing protein (.1), Pleckstrin homology (PH) domain-containing protein (.2), Pleckstrin homology (PH) domain-containing protein (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G140500 [exp] 286 / 9e-98 AT4G23895 284 / 3e-97 Pleckstrin homology (PH) domain-containing protein (.1), Pleckstrin homology (PH) domain-containing protein (.2), Pleckstrin homology (PH) domain-containing protein (.3) Potri.001G091100 [exp] 284 / 4e-97 AT4G23895 313 / 1e-108 Pleckstrin homology (PH) domain-containing protein (.1), Pleckstrin homology (PH) domain-containing protein (.2), Pleckstrin homology (PH) domain-containing protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0266 [flax] [poplar] PH PF00169 [flax] [poplar] PH PH domain
Representative CDS sequence Show only first row Show all	>Lus10023081 pacid=23170384 polypeptide=Lus10023081 locus=Lus10023081.g ID=Lus10023081.BGIv1.0 annot-version=v1.0 ATGGATGATCGTCGTGGGAAGCTGAACATTGTCCCAGATCACTTTCAAGTTTCAACAGCCAGTGAGGAGGACAGTCCAAAGCTAGAAACTACACCTGTTT TGCAATCGAGAATTGACAATTCGCCTAGGCCCCAAAGCCTTTCCTGGTCAGCAAGAAAGTTCAGGACTGCTGCATCTATGTTGAGAATGTTCAGTCTACG TAGTCTACCTTGGAGCCCTGACGGTCAGGAAAAGGTTCAGATAACTATGGGAGAGTTGGAATCACTTCGGTCGGATCTTTCGGAGTTGGAAGAAAGGGAA TCCTACTTAAAAGCTCAGTTGGAACATGTCGATGAAATTCTGCGCTCAGCTCGCCTCTCTGGCTATTTATTCATCCGATCTAGATGGGCTGCTTTACCAG GCGAACCTCCAGTACTCGAAGACAGTGATATTGATGATTGGCTTCCTCGCTTTGTTGTCCTTCATGGACCATGCTTGTTCTTCTATTTATTAAGCACAGA TTTGAGTCCTCAAGATTCCACTCTGTTATCCGATGTTGTGGAAGTGGGTTCTCTACCAGATTCCATTCGGGAACATGATGAGATCCGATATGCCTTCTAT GTCTTAACCCGTCAAGGCCTCCGGTATGAATGCTGCAGCGCTTCCAAAGTGCAGGTGAACACATGGTTAGAAGCATTACAAACTGATTGCAGATTTGGTT GCGGTACAACAGAAGCAGCAATTGATGATTCGCCGAAGACCAAGACCCTTTCGTCGTCTGATTGA
AA sequence Show only first row Show all	>Lus10023081 pacid=23170384 polypeptide=Lus10023081 locus=Lus10023081.g ID=Lus10023081.BGIv1.0 annot-version=v1.0 MDDRRGKLNIVPDHFQVSTASEEDSPKLETTPVLQSRIDNSPRPQSLSWSARKFRTAASMLRMFSLRSLPWSPDGQEKVQITMGELESLRSDLSELEERE SYLKAQLEHVDEILRSARLSGYLFIRSRWAALPGEPPVLEDSDIDDWLPRFVVLHGPCLFFYLLSTDLSPQDSTLLSDVVEVGSLPDSIREHDEIRYAFY VLTRQGLRYECCSASKVQVNTWLEALQTDCRFGCGTTEAAIDDSPKTKTLSSSD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G23895			Pleckstrin homology (PH) domai...		Lus10023081 [exp]	0	1
AT3G54480		SKP5, SKIP5	SKP1/ASK-interacting protein 5...		Lus10024168 [exp]	4.9	0.9314
AT3G46590		ATTRP2, TRFL1	TRF-like 1 (.1.2.3)		Lus10016527 [exp]	6.0	0.9221
AT4G14290			alpha/beta-Hydrolases superfam...		Lus10021948 [exp]	8.7	0.9234
AT2G44140			Peptidase family C54 protein (...		Lus10027079 [exp]	13.0	0.9283
					Lus10034398 [exp]	16.3	0.9198
AT4G14290			alpha/beta-Hydrolases superfam...		Lus10041237 [exp]	16.9	0.9079
AT2G19560		ESSP1, AtTHP1, ...	ectopic expression of seed sto...		Lus10008561 [exp]	17.4	0.8950
AT4G28220		NDB1	NAD(P)H dehydrogenase B1 (.1)		Lus10039769 [exp]	20.0	0.8938
AT5G24270		ATSOS3, CBL4, S...	CALCINEURIN B-LIKE PROTEIN 4, ...		Lus10030252 [exp]	20.2	0.9059
AT5G55100			SWAP (Suppressor-of-White-APri...		Lus10032646 [exp]	22.5	0.9107

Compare expression of checked genes

Lus10023081 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.