Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032385 [exp] 159 / 8e-51 ND 39 / 1e-04 Lus10023082 [exp] 127 / 1e-38 ND / Lus10001828 [exp] 79 / 1e-19 ND 35 / 0.003 Lus10003883 [exp] 76 / 2e-18 ND / Lus10003882 [exp] 65 / 2e-14 ND 35 / 0.004
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G140100 [exp] 59 / 4e-12 AT1G64405 42 / 5e-06 unknown protein Potri.001G091500 [exp] 56 / 6e-11 AT1G64405 42 / 5e-06 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10023083 pacid=23170298 polypeptide=Lus10023083 locus=Lus10023083.g ID=Lus10023083.BGIv1.0 annot-version=v1.0 ATGGGAAATTGCTTACAGAGAAACAAACTAATGAGCCAAGTGCACCAAGCTGAAGAAGAAGACACTGTCAGCAAGCATTCATGTGACTACTTGAAGGAGG AGATCAAGGAAGAAGAGAAACCTGCATCTGTTAATGGGAAGAAAGTGAAGATAGTACTGAGCAAGGAGGAGCTGGACTGGCTGATGTTGGAGCTCAACAA TGGAGGATCCGCGAAGAAGATTGAAGATGCTCTGGCTGAGATCCAGAGAAGCAGAGGATCGCCTCTCAAACCAGTTAATGTTGTTTTTGATTTGGACGAC GAGGGTGATGAGGATTATGAGGATGAGGATGATGATGAGAGTAGTAATTGCTGGCGGCCTTCTTTGGACAGCATCCCTGAAGAAGAAGAAGAAGAAGAAG AAGAAGAATCTGAGAGATGA
AA sequence Show only first row Show all	>Lus10023083 pacid=23170298 polypeptide=Lus10023083 locus=Lus10023083.g ID=Lus10023083.BGIv1.0 annot-version=v1.0 MGNCLQRNKLMSQVHQAEEEDTVSKHSCDYLKEEIKEEEKPASVNGKKVKIVLSKEELDWLMLELNNGGSAKKIEDALAEIQRSRGSPLKPVNVVFDLDD EGDEDYEDEDDDESSNCWRPSLDSIPEEEEEEEEEESER

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10023083 [exp]	0	1
AT3G29000			Calcium-binding EF-hand family...		Lus10019090 [exp]	7.9	0.7656
AT4G19540		INDH, INDL	IND1(iron-sulfur protein requi...		Lus10024867 [exp]	11.1	0.7409
AT2G15580			RING/U-box superfamily protein...		Lus10001688 [exp]	13.0	0.7292
AT1G76390		PUB43	plant U-box 43, ARM repeat sup...		Lus10030734 [exp]	18.5	0.7212
AT1G54340		ICDH	isocitrate dehydrogenase (.1)		Lus10010431 [exp]	46.2	0.7149
AT2G27830			unknown protein		Lus10006996 [exp]	61.8	0.7043
AT4G27130			Translation initiation factor ...		Lus10031550 [exp]	65.7	0.7057
AT1G14860		ATNUDT18	nudix hydrolase homolog 18 (.1...		Lus10003713 [exp]	70.8	0.7005
AT1G14140			Mitochondrial substrate carrie...		Lus10030443 [exp]	74.7	0.7056
AT3G60540			Preprotein translocase Sec, Se...		Lus10025029 [exp]	82.8	0.7052

Compare expression of checked genes

Lus10023083 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.