Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23860 425 / 6e-147 PHD finger protein-related (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032384 [exp] 700 / 0 AT4G23860 463 / 9e-162 PHD finger protein-related (.1.2.3) Lus10041960 [exp] 43 / 0.0002 AT4G39100 291 / 7e-101 short life, PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.1), PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G140000 [exp] 533 / 0 AT4G23860 460 / 1e-160 PHD finger protein-related (.1.2.3) Potri.001G091600 [exp] 520 / 0 AT4G23860 444 / 4e-154 PHD finger protein-related (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02207 [flax] [poplar] zf-UBR Putative zinc finger in N-recognin (UBR box)
Representative CDS sequence Show only first row Show all	>Lus10023084 pacid=23170306 polypeptide=Lus10023084 locus=Lus10023084.g ID=Lus10023084.BGIv1.0 annot-version=v1.0 ATGGCGGACGCATTTGATGACGAGACTGAGCAGACCGTGACCATGGACGAGTATCTTAAAGGGGTCGAAGCTGAGGAGTTGGAAGCTGATCTGGTATTGG GTGGAGATGAGGGCAAGGACTGCACCTATAATTTGGGCTATGTCAAGAGGCAGGCAATTTTTTCATGTTTGACTTGTACTCCTGAAGGGAATGCTGGAGT TTGTACAGCTTGCAGCTTGTCTTGCCATGATGGCCATGAGATTGTTGAATTATGGACCAAAAGAAATTTCCGCTGTGATTGTGGAAATTCCAAGTTTGGA GAGTTCTTCTGCAAGCTTTGCCCGAGCAAAGATGTTGAGAATGTCGAGAATTCATATAATCACAACTTCAAAGGTCTCTACTGCACATGTGGACGCCCAT ATCCTGATCCAGATACTGAAGAACAGCAGGAGATGATACAGTGTATATTATGCGAGGATTGGTTTCACGAGGAGCATTTGGGTCTGGAGTCTGTAAATGA GATCCCTAGAGACAGTGATGGAGAGCCTCTGTATGATGAATTCATATGCAAAGCGTGTTCAACAGTTTGTTCATTTCTGACACTGTATCCCCAGACAATC CGAGCTATAGAATGTCATGCTGGTGACTCCAGTTCTAATACTAACAAAGATAAAGGTGTAATGGAAAGCCATCCTTCCCTGACTCTGAATGGGAAAGTTG ACAACAATGTTGGTTCTGGTCCATCTGGCAATGGTGGCGAAATAATTAGTCCAAAAGATGTTGCAATGGAGAGGGGATCTTCGAGCCATGGAAGTATTCA GAAGAATGATTGTTCAGATGCAAGTGCTGATGAACAGAATGTTAATGCTGGTTGTGTTCTGGGAAATAACATTGAAGTATCTCCTACTTTGGAGATTAAA CCGTTCTTTCTTGCCAAAAACTGGAGGGGACTCCTGTGCATATGTGAAAAATGCTTGGATTTGTACAAACAGAAGCGTGTAAGCTATCTTATTGATAAGG AGGACTCGATTGCCGAGTATGAGATGATGGCAAAGCAGAAGAGGGAGGAGAAGTTACAGAAACAAGAAGGCGATGAGATGGATCTTTTAAACAAACTTGG TCATGTAGAGAAGATGGAGATACTCAATGGCATTGCTGACTTCAAGGATGAGTTCCGTTCATTTATGGAGTCATTTGATCCATCAAAGACTGTAACATCA ACTGATGTACAGCAGATCTTCGAGAATCTGGCAAAGAAACGCAGACGTATGTAG
AA sequence Show only first row Show all	>Lus10023084 pacid=23170306 polypeptide=Lus10023084 locus=Lus10023084.g ID=Lus10023084.BGIv1.0 annot-version=v1.0 MADAFDDETEQTVTMDEYLKGVEAEELEADLVLGGDEGKDCTYNLGYVKRQAIFSCLTCTPEGNAGVCTACSLSCHDGHEIVELWTKRNFRCDCGNSKFG EFFCKLCPSKDVENVENSYNHNFKGLYCTCGRPYPDPDTEEQQEMIQCILCEDWFHEEHLGLESVNEIPRDSDGEPLYDEFICKACSTVCSFLTLYPQTI RAIECHAGDSSSNTNKDKGVMESHPSLTLNGKVDNNVGSGPSGNGGEIISPKDVAMERGSSSHGSIQKNDCSDASADEQNVNAGCVLGNNIEVSPTLEIK PFFLAKNWRGLLCICEKCLDLYKQKRVSYLIDKEDSIAEYEMMAKQKREEKLQKQEGDEMDLLNKLGHVEKMEILNGIADFKDEFRSFMESFDPSKTVTS TDVQQIFENLAKKRRRM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G23860			PHD finger protein-related (.1...		Lus10023084 [exp]	0	1
AT2G45490		ATAUR3	ataurora3 (.1)		Lus10006266 [exp]	1.4	0.9162
AT2G47580		U1A	spliceosomal protein U1A (.1)		Lus10003358 [exp]	2.4	0.8915
AT3G59110			Protein kinase superfamily pro...		Lus10006544 [exp]	2.8	0.8766
AT3G49250		IDN1, DMS3	INVOLVED IN DE NOVO 1, defecti...		Lus10008855 [exp]	3.5	0.8790
AT3G62870			Ribosomal protein L7Ae/L30e/S1...		Lus10010745 [exp]	5.0	0.8744
AT3G07170			Sterile alpha motif (SAM) doma...		Lus10025917 [exp]	5.5	0.8739
AT1G21690		RFC4, EMB1968	replication factor C 4, embryo...		Lus10028543 [exp]	5.5	0.8673
AT3G48210			unknown protein		Lus10042089 [exp]	5.9	0.8706
AT1G15910		FDM1	factor of DNA methylation 1, X...		Lus10037986 [exp]	7.2	0.8586
AT1G19100			Histidine kinase-, DNA gyrase ...		Lus10042100 [exp]	7.3	0.8685

Compare expression of checked genes

Lus10023084 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.