Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G46494 86 / 3e-18 RING/U-box superfamily protein (.1) AT5G53110 84 / 1e-17 RING/U-box superfamily protein (.1) AT5G36001 80 / 4e-17 RING/U-box superfamily protein (.1.2) AT2G46495 79 / 6e-16 RING/U-box superfamily protein (.1) AT2G25410 66 / 1e-11 RING/U-box superfamily protein (.1) AT1G28040 54 / 8e-08 RING/U-box superfamily protein (.1) AT1G18390 49 / 4e-06 Protein kinase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003401 [exp] 97 / 1e-22 AT5G53110 187 / 5e-57 RING/U-box superfamily protein (.1) Lus10012628 [exp] 92 / 5e-20 AT5G53110 284 / 5e-93 RING/U-box superfamily protein (.1) Lus10014923 [exp] 80 / 1e-15 AT1G67000 335 / 2e-107 Protein kinase superfamily protein (.1) Lus10010123 [exp] 67 / 1e-12 AT5G53110 114 / 1e-30 RING/U-box superfamily protein (.1) Lus10025553 [exp] 65 / 7e-11 AT1G70250 341 / 4e-108 receptor serine/threonine kinase, putative (.1) Lus10025491 [exp] 57 / 1e-08 AT5G53110 80 / 2e-16 RING/U-box superfamily protein (.1) Lus10025547 [exp] 50 / 2e-06 AT1G66920 345 / 2e-111 Protein kinase superfamily protein (.1.2) Lus10026761 [exp] 50 / 3e-06 AT1G67000 334 / 4e-107 Protein kinase superfamily protein (.1) Lus10007845 [exp] 46 / 3e-05 AT5G53110 79 / 9e-17 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G091700 [exp] 154 / 9e-43 AT5G53110 223 / 1e-69 RING/U-box superfamily protein (.1) Potri.003G139900 [exp] 152 / 7e-42 AT5G53110 253 / 3e-81 RING/U-box superfamily protein (.1) Potri.015G017800 [exp] 105 / 7e-25 AT5G53110 389 / 1e-134 RING/U-box superfamily protein (.1) Potri.002G170300 [exp] 103 / 4e-24 AT2G46495 317 / 4e-106 RING/U-box superfamily protein (.1) Potri.014G098200 [exp] 94 / 6e-21 AT2G46495 290 / 1e-95 RING/U-box superfamily protein (.1) Potri.015G018200 [exp] 94 / 1e-20 AT1G66920 368 / 1e-119 Protein kinase superfamily protein (.1.2) Potri.012G011500 [exp] 86 / 3e-18 AT5G53110 353 / 2e-120 RING/U-box superfamily protein (.1) Potri.012G003400 [exp] 82 / 2e-16 AT1G66920 238 / 2e-71 Protein kinase superfamily protein (.1.2) Potri.012G002800 [exp] 80 / 6e-16 AT1G66920 346 / 2e-111 Protein kinase superfamily protein (.1.2) Potri.012G003500 [exp] 75 / 3e-14 AT1G66920 358 / 4e-116 Protein kinase superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10023086 pacid=23170382 polypeptide=Lus10023086 locus=Lus10023086.g ID=Lus10023086.BGIv1.0 annot-version=v1.0 ATGCCTCTTTTTCCAACCACCCTCTTCCTCCTCCTCATCCACCTCTCCTCCGCCGCCGCCGGCTCCTGCAGCGGATCCTGCCGCCTAGGCGCCCCCAACG TCCGCTTCCCCTTCGGCCTCAGCAGCCAAAGCCAGCTGATTAACAACAACAACAACACCAACTCACGATGTAGCTTCCCCGGGTTCTCCCTCACGTGCGA CGGAGAGGGGCAGACGATGATGGCCCTCGGAAACTCGGGCGAGTTCGTCGTCCAGTACATCGAGTACCACAGCCAGGTAGCGTACATCCGCGACCCAGGG GATTGCCTGCCCAGAAGGTACCTAGATTCATTCTCCCTGCAAGGCACGCCGTTTATTCCTGAGTCAACCGGGATTTTCACTTTCCTTAACTGCTCCGATT TGACCGGGTCCGGATCGAGCGCCGTGCCCGGGTCGAGACGGGTCGGGTGCTTGAGCGGGGAAGGGTTCACGGTACGTGCGATGCGGACGAGTGCTTTCAG GGGGATGAATTTGACGGCGGACGCGCCGTCGTGTGGCGTGGTGTCGACGGACGTGAGGATTCCGGTGAGTTGGCCGCGGTGGTCAGATGCGGATACGAGG TTGATTTGGAGCATGCCGGATTGCTTGCCGTGTGAGGAGGACGGTAGGATTTGCGAGTTTACGGGCAGGAATGGGTTGGATATCGGGTGCTCCCAACCGG ACAGGAAAACTGAAGCTCGGTTCACAACTGAGCCAATTGAGCCTCGACATGTCTCCAACACAATGTACACTCAGTCGTCTTTCAAAGAGGGCCAAATACG GGCTGGTCCTAGGCGTGGGGATCCCGGGCCTAATATCCGCAATCGGCCTCTGCTGCTTCGTATGCGGCAAAATCGGAACCCGACGAAACGCCAGCAGCAG AAGCTTCCACACCGCCGCCACAGCCGGCCATCAGCCGCCTGTTTCCTACGTCTTGTCGGGACTGGACGAGCCGACCATCCAATCATACCCGAAAACCCTC CTAGGGGAGAGCCGGCGGCTCCCGAAGCCGGCCGACAGCACTTGTCCTATCTGTCTGTCGGAGTACGAGCCGAAAGAGACGCTGCGAACGATTCCGGAGT GCAACCATTACTTCCACGCGGAGTGCATCGACGAGTGGCTGAAAATGAACGCCACGTGTCCTCTGTGCCGGAACACGCCGGAGTCGTCCGTGGCCAGCAC GCCTTCCCCTTCGTTTATGTCCTCCTCTACGTCGTCGTCCGGGCTCTCTACTCCGTAGGAGGAGGAGGGTAA
AA sequence Show only first row Show all	>Lus10023086 pacid=23170382 polypeptide=Lus10023086 locus=Lus10023086.g ID=Lus10023086.BGIv1.0 annot-version=v1.0 MPLFPTTLFLLLIHLSSAAAGSCSGSCRLGAPNVRFPFGLSSQSQLINNNNNTNSRCSFPGFSLTCDGEGQTMMALGNSGEFVVQYIEYHSQVAYIRDPG DCLPRRYLDSFSLQGTPFIPESTGIFTFLNCSDLTGSGSSAVPGSRRVGCLSGEGFTVRAMRTSAFRGMNLTADAPSCGVVSTDVRIPVSWPRWSDADTR LIWSMPDCLPCEEDGRICEFTGRNGLDIGCSQPDRKTEARFTTEPIEPRHVSNTMYTQSSFKEGQIRAGPRRGDPGPNIRNRPLLLRMRQNRNPTKRQQQ KLPHRRHSRPSAACFLRLVGTGRADHPIIPENPPRGEPAAPEAGRQHLSYLSVGVRAERDAANDSGVQPLLPRGVHRRVAENERHVSSVPEHAGVVRGQH AFPFVYVLLYVVVRALYSVGGGG

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G53110			RING/U-box superfamily protein...		Lus10023086 [exp]	0	1
AT1G17020		ATSRG1, SRG1	senescence-related gene 1 (.1)		Lus10022292 [exp]	1.0	0.9680
AT2G02800		Kin2, APK2B	protein kinase 2B (.1.2)		Lus10021489 [exp]	3.7	0.9608
AT2G02800		Kin2, APK2B	protein kinase 2B (.1.2)		Lus10022591 [exp]	3.9	0.9572
AT5G06720		ATPA2	peroxidase 2 (.1)		Lus10004163 [exp]	4.0	0.9399
AT5G18150			Methyltransferase-related prot...		Lus10020287 [exp]	4.6	0.9400
AT2G18570			UDP-Glycosyltransferase superf...		Lus10041713 [exp]	7.5	0.9264
AT5G13700		ATPAO1, APAO	polyamine oxidase 1 (.1)		Lus10029495 [exp]	8.4	0.9377
AT2G19130			S-locus lectin protein kinase ...		Lus10042266 [exp]	9.2	0.9437
AT4G27290			S-locus lectin protein kinase ...		Lus10016871 [exp]	9.6	0.9446
AT5G47720			Thiolase family protein (.1.2....		Lus10038749 [exp]	10.4	0.9408

Compare expression of checked genes

Lus10023086 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.