Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62050 372 / 3e-126 ATOXA1, OXA1AT, OXA1 HOMOLOG OF YEAST OXIDASE ASSEMBLY 1 \(OXA1\) IN ARABIDOPSIS THALIANA, ARABIDOPSIS THALIANA HOMOLOG OF YEAST OXIDASE ASSEMBLY 1 \(OXA1\), homolog of yeast oxidase assembly 1 (OXA1) (.1) AT2G46470 316 / 2e-104 OXA1L inner membrane protein OXA1-like (.1) AT3G44370 73 / 1e-13 Membrane insertion protein, OxaA/YidC with tetratricopeptide repeat domain (.1) AT3G49150 63 / 3e-10 F-box/RNI-like superfamily protein (.1) AT1G65080 46 / 3e-05 Membrane insertion protein, OxaA/YidC with tetratricopeptide repeat domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032381 [exp] 382 / 8e-131 AT5G62050 270 / 4e-87 HOMOLOG OF YEAST OXIDASE ASSEMBLY 1 \(OXA1\) IN ARABIDOPSIS THALIANA, ARABIDOPSIS THALIANA HOMOLOG OF YEAST OXIDASE ASSEMBLY 1 \(OXA1\), homolog of yeast oxidase assembly 1 (OXA1) (.1) Lus10001427 [exp] 349 / 7e-117 AT5G62050 387 / 4e-132 HOMOLOG OF YEAST OXIDASE ASSEMBLY 1 \(OXA1\) IN ARABIDOPSIS THALIANA, ARABIDOPSIS THALIANA HOMOLOG OF YEAST OXIDASE ASSEMBLY 1 \(OXA1\), homolog of yeast oxidase assembly 1 (OXA1) (.1) Lus10001639 [exp] 348 / 9e-117 AT5G62050 382 / 3e-130 HOMOLOG OF YEAST OXIDASE ASSEMBLY 1 \(OXA1\) IN ARABIDOPSIS THALIANA, ARABIDOPSIS THALIANA HOMOLOG OF YEAST OXIDASE ASSEMBLY 1 \(OXA1\), homolog of yeast oxidase assembly 1 (OXA1) (.1) Lus10026414 [exp] 57 / 2e-08 AT3G44370 419 / 9e-141 Membrane insertion protein, OxaA/YidC with tetratricopeptide repeat domain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G091800 [exp] 446 / 3e-155 AT5G62050 451 / 5e-157 HOMOLOG OF YEAST OXIDASE ASSEMBLY 1 \(OXA1\) IN ARABIDOPSIS THALIANA, ARABIDOPSIS THALIANA HOMOLOG OF YEAST OXIDASE ASSEMBLY 1 \(OXA1\), homolog of yeast oxidase assembly 1 (OXA1) (.1) Potri.018G140100 [exp] 380 / 1e-129 AT5G62050 365 / 8e-124 HOMOLOG OF YEAST OXIDASE ASSEMBLY 1 \(OXA1\) IN ARABIDOPSIS THALIANA, ARABIDOPSIS THALIANA HOMOLOG OF YEAST OXIDASE ASSEMBLY 1 \(OXA1\), homolog of yeast oxidase assembly 1 (OXA1) (.1) Potri.006G073000 [exp] 374 / 7e-127 AT5G62050 373 / 1e-126 HOMOLOG OF YEAST OXIDASE ASSEMBLY 1 \(OXA1\) IN ARABIDOPSIS THALIANA, ARABIDOPSIS THALIANA HOMOLOG OF YEAST OXIDASE ASSEMBLY 1 \(OXA1\), homolog of yeast oxidase assembly 1 (OXA1) (.1) Potri.003G139800 [exp] 107 / 1e-27 AT5G62050 51 / 6e-08 HOMOLOG OF YEAST OXIDASE ASSEMBLY 1 \(OXA1\) IN ARABIDOPSIS THALIANA, ARABIDOPSIS THALIANA HOMOLOG OF YEAST OXIDASE ASSEMBLY 1 \(OXA1\), homolog of yeast oxidase assembly 1 (OXA1) (.1) Potri.009G121800 [exp] 63 / 2e-10 AT3G44370 415 / 5e-140 Membrane insertion protein, OxaA/YidC with tetratricopeptide repeat domain (.1) Potri.013G087950 [exp] 61 / 1e-09 AT3G44370 413 / 1e-138 Membrane insertion protein, OxaA/YidC with tetratricopeptide repeat domain (.1) Potri.009G029100 [exp] 50 / 2e-06 AT2G28800 545 / 0.0 ALBINO 3, 63 kDa inner membrane family protein (.1.2.3.4) Potri.001G237800 [exp] 50 / 2e-06 AT2G28800 566 / 0.0 ALBINO 3, 63 kDa inner membrane family protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0376 [flax] [poplar] Oxa1 PF02096 [flax] [poplar] 60KD_IMP 60Kd inner membrane protein
Representative CDS sequence Show only first row Show all	>Lus10023088 pacid=23170422 polypeptide=Lus10023088 locus=Lus10023088.g ID=Lus10023088.BGIv1.0 annot-version=v1.0 ATGGCTTGCTTTCGTAGCCTCTGCAATAGGTCAAGCCTTATTAGAAAACGGGTTAACCTGTCGTTTAGCTATGTTCTTCATGACCATGATCGTGAAGAGA GCTCAATTGATGGCCGCCAATCTCAGAAGGGAAGTGGAAATGTGTTGCAACAGAGGTTCTTTGGGAACGCCTTGAGTAATTCAACTGCTTTCGGAAGACG TGCTGGGATTTTGCTACCGTCGGGTATTGGAATGTCTTCTATACGGTATATGTCCATGACCATTGGTGAAAGCTCGGATAAGATTGAACTGATGAGCGAT GTTGCCGAGACACTTACTGAAATGCCTATAGAAGCTGTGGCCAGTCAAGTTGCTGCTATAAATGAAGTTGCGATTGCTGCTGCTGATTCGTTCTTGCCTG TTGCATTCCTTCAGCATTGCATTGATGCAATCCATTCTTATACTGGGTGTAACTGGTTTATTTCCATCGGTATAGCAACTCTTCTCATTAGAACAGCAAC GATTCCCCTCCTGATCAATCAACTTAAAGCAACCACAAAGCTTTCACTTTTGAGGCCACGTCTGGAGAAGATTCAGCAAGATATTCGAGAGAAGAGCATG GAGCCAGAGTCTGTTTATGCGGGCCAAATGGAAATGAAGAAGCTTTTTGCGGAATATGGTGTTACCCCATTTACTCCATTGAAGGGAATTTTTATCCAGG GTCCTGTGTTTGTTTGCTTCTTCCTTGCGATCTCTAACATGGTGGAAAAAGAGCCATCCTTTAAAAATGGTGGAGCATTCTGGTTTACTGACCTGACTAC TCCTGACAGTATGTACTTGCTTCCGGTTTTGACTGGATTGAGTATTTTGATAACAGTTGAGACTAATATGCAAGAAGGTTTGGAGGGTAATCCTATTCTT GGCACCATGAAAACGATCTCGAGAGTCTTTGCTGTAGCTGCTGTTCCGTTAACCGCTTCCTTCCCTACGGCTTTATTTGGCTATTGGCTGACGTCCAACA TGTTCTCATTGTTGTACGGTATAGTACTCAAGGTTCCTGGTGTAAAGAAATCCTTGGGCGTTCCCGACATACCCGTGACACCACCAGGTGCTTCAACTGG ACAGGCTTCGTTCAATCTGTTTCCAGCTTTCAAACCGAATCCAGTAGTGGTGGAAGAAGTGTCATCGTCTGTGCCAAATGAATCGTCGGTGAAGAAACCT AGCCGGAGAGCGTCATCTTCTTCTATCCTTAGCCAGAGACTTCGAAGTCTAGAGAAGCAAGTGAAGGAGCGGAAGAAAAGCAAGAAGTAG
AA sequence Show only first row Show all	>Lus10023088 pacid=23170422 polypeptide=Lus10023088 locus=Lus10023088.g ID=Lus10023088.BGIv1.0 annot-version=v1.0 MACFRSLCNRSSLIRKRVNLSFSYVLHDHDREESSIDGRQSQKGSGNVLQQRFFGNALSNSTAFGRRAGILLPSGIGMSSIRYMSMTIGESSDKIELMSD VAETLTEMPIEAVASQVAAINEVAIAAADSFLPVAFLQHCIDAIHSYTGCNWFISIGIATLLIRTATIPLLINQLKATTKLSLLRPRLEKIQQDIREKSM EPESVYAGQMEMKKLFAEYGVTPFTPLKGIFIQGPVFVCFFLAISNMVEKEPSFKNGGAFWFTDLTTPDSMYLLPVLTGLSILITVETNMQEGLEGNPIL GTMKTISRVFAVAAVPLTASFPTALFGYWLTSNMFSLLYGIVLKVPGVKKSLGVPDIPVTPPGASTGQASFNLFPAFKPNPVVVEEVSSSVPNESSVKKP SRRASSSSILSQRLRSLEKQVKERKKSKK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G62050		ATOXA1, OXA1AT,...	HOMOLOG OF YEAST OXIDASE ASSEM...		Lus10023088 [exp]	0	1
AT2G37500			arginine biosynthesis protein ...		Lus10023757 [exp]	3.2	0.5676
AT5G46100			Pentatricopeptide repeat (PPR)...		Lus10015397 [exp]	43.1	0.4961
AT1G77170			Tetratricopeptide repeat (TPR)...		Lus10029884 [exp]	45.5	0.5235
AT5G52290		SHOC1	shortage in chiasmata 1 (.1)		Lus10014981 [exp]	65.4	0.4920
AT1G78610		MSL6	mechanosensitive channel of sm...		Lus10023990 [exp]	70.4	0.4766
AT1G27190			Leucine-rich repeat protein ki...		Lus10010615 [exp]	85.1	0.4582
AT1G21150			Mitochondrial transcription te...		Lus10016552 [exp]	137.6	0.4323

Compare expression of checked genes

Lus10023088 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.