Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23850 926 / 0 LACS4 long-chain acyl-CoA synthetase 4, AMP-dependent synthetase and ligase family protein (.1) AT4G11030 864 / 0 AMP-dependent synthetase and ligase family protein (.1) AT1G64400 857 / 0 LACS3 long-chain acyl-CoA synthetase 3, AMP-dependent synthetase and ligase family protein (.1) AT1G49430 642 / 0 LRD2, LACS2 LATERAL ROOT DEVELOPMENT 2, long-chain acyl-CoA synthetase 2 (.1) AT2G47240 579 / 0 CER8, LACS1 LONG-CHAIN ACYL-COA SYNTHASE 1, ECERIFERUM 8, AMP-dependent synthetase and ligase family protein (.1.2) AT5G27600 366 / 2e-116 LACS7, ATLACS7 long-chain acyl-CoA synthetase 7 (.1) AT3G05970 360 / 3e-114 LACS6, ATLACS6 long-chain acyl-CoA synthetase 6 (.1) AT2G04350 278 / 5e-83 LACS8 long-chain acyl-CoA synthetase 8, AMP-dependent synthetase and ligase family protein (.1.2) AT1G77590 253 / 8e-74 LACS9 long chain acyl-CoA synthetase 9 (.1) AT3G23790 127 / 3e-30 AAE16 acyl activating enzyme 16, AMP-dependent synthetase and ligase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032380 [exp] 1157 / 0 AT4G23850 1053 / 0.0 long-chain acyl-CoA synthetase 4, AMP-dependent synthetase and ligase family protein (.1) Lus10001830 [exp] 891 / 0 AT4G11030 910 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10023832 [exp] 659 / 0 AT1G49430 953 / 0.0 LATERAL ROOT DEVELOPMENT 2, long-chain acyl-CoA synthetase 2 (.1) Lus10021021 [exp] 654 / 0 AT1G49430 955 / 0.0 LATERAL ROOT DEVELOPMENT 2, long-chain acyl-CoA synthetase 2 (.1) Lus10032840 [exp] 573 / 0 AT2G47240 961 / 0.0 LONG-CHAIN ACYL-COA SYNTHASE 1, ECERIFERUM 8, AMP-dependent synthetase and ligase family protein (.1.2) Lus10002414 [exp] 537 / 0 AT2G47240 932 / 0.0 LONG-CHAIN ACYL-COA SYNTHASE 1, ECERIFERUM 8, AMP-dependent synthetase and ligase family protein (.1.2) Lus10029918 [exp] 379 / 2e-121 AT5G27600 1122 / 0.0 long-chain acyl-CoA synthetase 7 (.1) Lus10004483 [exp] 377 / 2e-120 AT5G27600 1121 / 0.0 long-chain acyl-CoA synthetase 7 (.1) Lus10010530 [exp] 353 / 2e-111 AT5G27600 1095 / 0.0 long-chain acyl-CoA synthetase 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G139700 [exp] 978 / 0 AT4G23850 1094 / 0.0 long-chain acyl-CoA synthetase 4, AMP-dependent synthetase and ligase family protein (.1) Potri.001G091900 [exp] 977 / 0 AT4G23850 1101 / 0.0 long-chain acyl-CoA synthetase 4, AMP-dependent synthetase and ligase family protein (.1) Potri.009G109900 [exp] 669 / 0 AT1G49430 951 / 0.0 LATERAL ROOT DEVELOPMENT 2, long-chain acyl-CoA synthetase 2 (.1) Potri.002G192400 [exp] 546 / 0 AT2G47240 950 / 0.0 LONG-CHAIN ACYL-COA SYNTHASE 1, ECERIFERUM 8, AMP-dependent synthetase and ligase family protein (.1.2) Potri.010G090200 [exp] 382 / 8e-123 AT3G05970 1078 / 0.0 long-chain acyl-CoA synthetase 6 (.1) Potri.013G021300 [exp] 377 / 9e-121 AT5G27600 1156 / 0.0 long-chain acyl-CoA synthetase 7 (.1) Potri.014G169400 [exp] 277 / 2e-82 AT2G04350 1051 / 0.0 long-chain acyl-CoA synthetase 8, AMP-dependent synthetase and ligase family protein (.1.2) Potri.005G177500 [exp] 274 / 1e-81 AT1G77590 1058 / 0.0 long chain acyl-CoA synthetase 9 (.1) Potri.002G084100 [exp] 263 / 8e-78 AT1G77590 1079 / 0.0 long chain acyl-CoA synthetase 9 (.1) Potri.014G169600 [exp] 257 / 1e-76 AT2G04350 866 / 0.0 long-chain acyl-CoA synthetase 8, AMP-dependent synthetase and ligase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0378 [flax] [poplar] ANL PF00501 [flax] [poplar] AMP-binding AMP-binding enzyme
Representative CDS sequence Show only first row Show all	>Lus10023089 pacid=23170360 polypeptide=Lus10023089 locus=Lus10023089.g ID=Lus10023089.BGIv1.0 annot-version=v1.0 ATGTCGCAGATGAAGTATCTGATCGAGGTTGAGAAAGGTCAGCCGGGGAAGGACGGTAAGCCGTCGATCGGCGCTGCTTACCGCAGCGTGTTTGCTAAGG ATGGATTTCCTCCTCCTATTCCCGGTCTTGACTGCTGCTGGGACGTTTTCCGGCTGAGCGTGGAGAAGTATCCAAACAATCCGATGCTCGGCCACCGGGA GATTGTAGACGGCAAGGCCGGGAAATATGTGTGGCAGACGTACAAGGAAGTCTACAACATAGTTATCAAAGTTGGAAATGCTATTCGCAGCTGTGGTGTT GAACCAGTTGGGCTCTATACAGCCTGTCCAACTGATTGCTTCTGTGTTCGATTTGGCTCCCTTTTCGGTGTATATGCTGGTTATTTGGATCAGAATGATC TTGGATACAAAGTGCATCTGAGGGCTTGCAATGCTCATGGACTGTACTGTGTCCCTTTATACGACACCTTAGGTGCTGGCGCTGTGGAATATATTTTATG TCATTCAGAGATTTCAATTGCTTTTGCTGAGGAGAAAAAGATTCCCGAGCTATTGAAAACGTTCCCAAATGCAACACAGTATGTGAAAACTGTTGTGAGC TTTGGTAAGGTTACTCCTGAGCAGAGACAGGAAATGGAAAAGTTTGGCCTGTCAGTCTATTCTTGGGAAGAATTTATCAAACTGGGGGAGAACAAAGAAT ACGATTTCCCAGAGAAGAAAAAAAGTGACATATGTACAATTATGTATACTAGTGGAACAACTGGTGATCCCAAGGGTGTCATGATTTCAAATAATAATAT CATGACTCTTATAGCTGGGGTGAAACGGGTACTAGAGTCTGTGAATGAATCGCTGACTACAAAGGACGTGTATCTGTCATACCTTCCTCTTGCTCATATC TTTGATCGAGTGATCGAGGAATTATTTATTTTTCATGGTGCCTCTATAGGGTTCTGGAGAGGGACATTGTATCTAAATTTTTTCCTAAATGGCCAACATT GCTCCCGGACTCAGCCTAGGGCGGGTCTTGGGGTGTTGGGTTTTAATAGTCTGGAGACTGGCTTGAGCTCCCTCCTTTGTCCTTTTAGATGCTTACATTC GAATACACATGCTCTTATTACTCACCTGGAAATTCTGTCTTTTTCTGTTCTCATCTCAGGCTTGACTCAGAAGATCTCTGCTGGTGGACTTCTGAAAAAA ACTTTGTTCAATTTTGCATACTCTCACAAACTGAGTAATTTGAAAGGGGGAAGTAAGACGGACGAGGCATCTCCACTCAGCGACAAATTTGTCTTTAGCA AGGTCAAGCAAGGGTTGGGAGGCAATGTACGGCTGATATTATCTGGAGCTGCACCTCTCGCCAGCCACGTCGAAGCTTATCTTCGAGTCGTCACATGTGC CCATGTTTTACAAGGATATGGTCTCACGGAGACTTGTGCTGGAAGTTTCGTCTCATTGCCAAATGACATGTCAATGCTTGGCACTGTTGGCCCTCCAACT CCAAACATTGATGTCCGCCTTGAATCAGTTCCTGAAATGAACTACGATGCTCTTTCGAGCACACCTCGTGGAGAAATCTGCATCCGTGGGGAGACCCTAT TTTCCGGCTACTATAAACGTGAAGATCTCACCGAGGAAGTTCTGATAGATGGCTGGTTCCACACAGGGGATGTTGGGGAATGGCAGCCCGATGGAAGCAA GGAAATCATTGATCGCAAGAGGAACATCTTCAAGCTCTCACAAGGAGAGTATGTTGCCGTGGAAAACCTGGAGAACATCTACGGTAGTACACCTGGCATT GATTCGATTTGGGTGTACGGGAACAGCTTCGAGTCGTTCCTCGTTGGGGTGGTGAACCCGAACCAGCCAGCACTGGAGAAATGGGCTCAAGAGAACGGTA TTAGTGAGGACTTCCGCACCCTCTGCGAGAATCCAAAGGCCAAAGAACACATCCTCCAAGAACTCACCAAGATTGGAAAAGAGAAGAAGTTGAAAGGCTT CGAGCTCCTGAAAGGTGTTCATCTTGAACCCGAGCCTTTTGACATGGAACGCGACCTCCTCACTCCAACGTACAAGAAGAAGAGACCCCAACTCCTCAAA TATTACCAGAATGTTCTCGACAACCTGTACAAGAGCGTCAACAGCAAGTTCAACAGCAAGTGA
AA sequence Show only first row Show all	>Lus10023089 pacid=23170360 polypeptide=Lus10023089 locus=Lus10023089.g ID=Lus10023089.BGIv1.0 annot-version=v1.0 MSQMKYLIEVEKGQPGKDGKPSIGAAYRSVFAKDGFPPPIPGLDCCWDVFRLSVEKYPNNPMLGHREIVDGKAGKYVWQTYKEVYNIVIKVGNAIRSCGV EPVGLYTACPTDCFCVRFGSLFGVYAGYLDQNDLGYKVHLRACNAHGLYCVPLYDTLGAGAVEYILCHSEISIAFAEEKKIPELLKTFPNATQYVKTVVS FGKVTPEQRQEMEKFGLSVYSWEEFIKLGENKEYDFPEKKKSDICTIMYTSGTTGDPKGVMISNNNIMTLIAGVKRVLESVNESLTTKDVYLSYLPLAHI FDRVIEELFIFHGASIGFWRGTLYLNFFLNGQHCSRTQPRAGLGVLGFNSLETGLSSLLCPFRCLHSNTHALITHLEILSFSVLISGLTQKISAGGLLKK TLFNFAYSHKLSNLKGGSKTDEASPLSDKFVFSKVKQGLGGNVRLILSGAAPLASHVEAYLRVVTCAHVLQGYGLTETCAGSFVSLPNDMSMLGTVGPPT PNIDVRLESVPEMNYDALSSTPRGEICIRGETLFSGYYKREDLTEEVLIDGWFHTGDVGEWQPDGSKEIIDRKRNIFKLSQGEYVAVENLENIYGSTPGI DSIWVYGNSFESFLVGVVNPNQPALEKWAQENGISEDFRTLCENPKAKEHILQELTKIGKEKKLKGFELLKGVHLEPEPFDMERDLLTPTYKKKRPQLLK YYQNVLDNLYKSVNSKFNSK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G23850		LACS4	long-chain acyl-CoA synthetase...		Lus10023089 [exp]	0	1
AT1G31190		IMPL1	myo-inositol monophosphatase l...		Lus10040601 [exp]	1.0	0.9173
AT4G27730		ATOPT6	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10022372 [exp]	10.4	0.8891
AT2G34830	WRKY	ATWRKY35, WRKY3...	maternal effect embryo arrest ...		Lus10038426 [exp]	16.7	0.8911
AT1G14185			Glucose-methanol-choline (GMC)...		Lus10030460 [exp]	21.2	0.8845
AT3G08030			Protein of unknown function, D...		Lus10016394 [exp]	25.2	0.8868
AT5G51500			Plant invertase/pectin methyle...		Lus10031719 [exp]	26.2	0.8851
AT5G40850		UPM1	urophorphyrin methylase 1 (.1....		Lus10027819 [exp]	37.4	0.8548
AT5G15130	WRKY	ATWRKY72, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10024246 [exp]	39.1	0.8816
AT4G34640		ERG9, SQS1	squalene synthase 1 (.1)		Lus10017499 [exp]	48.1	0.8709
AT1G09740			Adenine nucleotide alpha hydro...		Lus10015896 [exp]	50.6	0.8735

Compare expression of checked genes

Lus10023089 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.