Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G11080 84 / 3e-18 3xHMG-box1 3xHigh Mobility Group-box1, HMG (high mobility group) box protein (.1) AT4G23800 83 / 5e-18 3xHMG-box2, AT4G23800 3xHigh Mobility Group-box2, HMG (high mobility group) box protein (.1), HMG (high mobility group) box protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033951 [exp] 211 / 3e-66 AT4G11080 214 / 5e-65 3xHigh Mobility Group-box1, HMG (high mobility group) box protein (.1) Lus10032379 [exp] 199 / 9e-61 AT4G11080 481 / 1e-167 3xHigh Mobility Group-box1, HMG (high mobility group) box protein (.1) Lus10003904 [exp] 117 / 3e-30 AT4G11080 506 / 2e-177 3xHigh Mobility Group-box1, HMG (high mobility group) box protein (.1) Lus10001909 [exp] 110 / 2e-27 AT4G11080 496 / 2e-173 3xHigh Mobility Group-box1, HMG (high mobility group) box protein (.1) Lus10040574 [exp] 50 / 6e-08 AT4G23800 71 / 8e-16 3xHigh Mobility Group-box2, HMG (high mobility group) box protein (.1), HMG (high mobility group) box protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G093700 [exp] 76 / 1e-15 AT4G11080 325 / 2e-106 3xHigh Mobility Group-box1, HMG (high mobility group) box protein (.1) Potri.003G138000 [exp] 76 / 2e-15 AT4G11080 302 / 1e-97 3xHigh Mobility Group-box1, HMG (high mobility group) box protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0114 [flax] [poplar] HMG-box PF00505 [flax] [poplar] HMG_box HMG (high mobility group) box
Representative CDS sequence Show only first row Show all	>Lus10023090 pacid=23170274 polypeptide=Lus10023090 locus=Lus10023090.g ID=Lus10023090.BGIv1.0 annot-version=v1.0 ATGGCGGAAGTCGCTGATGTTCCCGCGAAGAGAGGTAGGAAGAACACCAAGAAAGTTCTGGATCAGAAGAAATCCACTACCAACGAGGCCAACATCTTGG CGCAGACGCTCGCAGCCGACTCCTCCTCGCCCTCCGTGATTCCTCCGCCGTCGTCGTCGGATGCCGATTCTATGAAGGAGAATCGTGATAGCATCTCCTC GGCCAAGAAGGGGAAGGCGGTCAAAGGCGGCAAACAGAAGGCGTCGTTCGAGAAGGAGATGGAAGAGATGCAGGAAATGCTTCAGCAGCTGAAGCTGGAG AAAGAGAAGACGGAGGAGATGTTGAAGGAGAAGGACGAGATGCTGAAGGCAAGGGAGGATGAGCTCGAGAACAAGGGGAAAGAGCAGCAGAAGCTGCAGT CGGAGCTCAAGAAGTTGCAGAAGCTCAAGGAGTTCAAACCTACACTCCATTTTCAGATATTGAAAGATAACGAGCCAGACGACAAGAGTAGGAATAAGAA GAAGAAAAAGAAGGACGGGACTGAAATGAAAAGGCCATCAACGCCTTACATCCTCTGGAGCAAAGATCAGTGGGCTGAGATCAAGAAGGCGAACCCAAAT GCTGATTTTAAAGAGACCTCCAACATTTTGGGAGCCAAGTGGAAGACTGTAACTGCAGAAGAGAAGAAGCCATACGAGGAGAAGTATCGTGCTGAGAAGG AAGCTTATTTGAAGGTGATGGCGATGGAGAAGCGTGACTGA
AA sequence Show only first row Show all	>Lus10023090 pacid=23170274 polypeptide=Lus10023090 locus=Lus10023090.g ID=Lus10023090.BGIv1.0 annot-version=v1.0 MAEVADVPAKRGRKNTKKVLDQKKSTTNEANILAQTLAADSSSPSVIPPPSSSDADSMKENRDSISSAKKGKAVKGGKQKASFEKEMEEMQEMLQQLKLE KEKTEEMLKEKDEMLKAREDELENKGKEQQKLQSELKKLQKLKEFKPTLHFQILKDNEPDDKSRNKKKKKKDGTEMKRPSTPYILWSKDQWAEIKKANPN ADFKETSNILGAKWKTVTAEEKKPYEEKYRAEKEAYLKVMAMEKRD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G23800		3xHMG-box2, AT4...	3xHigh Mobility Group-box2, HM...		Lus10023090 [exp]	0	1
AT4G29410			Ribosomal L28e protein family ...		Lus10012915 [exp]	2.8	0.9137
AT3G20780		RHL3, HYP6, BIN...	ROOT HAIRLESS 3, ELONGATED HYP...		Lus10031812 [exp]	3.5	0.9045
AT1G76540		CDKB2;1	cyclin-dependent kinase B2;1 (...		Lus10040593 [exp]	7.6	0.9116
AT2G43360		BIOB, BIO2	BIOTIN AUXOTROPH B, BIOTIN AUX...		Lus10025559 [exp]	8.0	0.9065
AT4G00230		XSP1	xylem serine peptidase 1 (.1)		Lus10000395 [exp]	8.7	0.8748
AT2G47580		U1A	spliceosomal protein U1A (.1)		Lus10008424 [exp]	10.2	0.8812
AT4G12540			unknown protein		Lus10025820 [exp]	11.5	0.9043
AT5G66750		CHR01, CHA1, SO...	SOMNIFEROUS 1, DECREASED DNA M...		Lus10041735 [exp]	13.9	0.9080
AT4G37210			Tetratricopeptide repeat (TPR)...		Lus10019658 [exp]	16.0	0.8915
AT2G43360		BIOB, BIO2	BIOTIN AUXOTROPH B, BIOTIN AUX...		Lus10027018 [exp]	16.5	0.8934

Compare expression of checked genes

Lus10023090 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.