Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G11080 229 / 5e-73 3xHMG-box1 3xHigh Mobility Group-box1, HMG (high mobility group) box protein (.1) AT4G23800 219 / 5e-69 3xHMG-box2, AT4G23800 3xHigh Mobility Group-box2, HMG (high mobility group) box protein (.1), HMG (high mobility group) box protein (.2) AT1G20696 66 / 2e-13 NFD3, NFD03, HMGB3 high mobility group B3 (.1.2.3) AT4G35570 64 / 7e-13 NFD5, NFD05, HMGD, HMGB5 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR 5, high mobility group B5 (.1) AT3G51880 64 / 2e-12 AtHMGB1, NFD1, HMGB1 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D1, high mobility group B1 (.1.2.3.4) AT1G20693 61 / 1e-11 HMGBETA1, NFD2, NFD02, HMGB2 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 02, HIGH MOBILITY GROUP BETA 1, high mobility group B2 (.1.2.3) AT2G17560 60 / 2e-11 NFD4, NFD04, HMGB4 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D4, high mobility group B4 (.1.2.3) AT2G34450 47 / 2e-06 HMG-box (high mobility group) DNA-binding family protein (.1), HMG-box (high mobility group) DNA-binding family protein (.2) AT5G23420 47 / 5e-06 HMGB6 high-mobility group box 6 (.1.2) AT1G04880 41 / 0.0004 ARID HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032379 [exp] 352 / 1e-120 AT4G11080 481 / 1e-167 3xHigh Mobility Group-box1, HMG (high mobility group) box protein (.1) Lus10033954 [exp] 323 / 1e-109 AT4G11080 283 / 5e-91 3xHigh Mobility Group-box1, HMG (high mobility group) box protein (.1) Lus10003904 [exp] 270 / 2e-88 AT4G11080 506 / 2e-177 3xHigh Mobility Group-box1, HMG (high mobility group) box protein (.1) Lus10033951 [exp] 266 / 8e-88 AT4G11080 214 / 5e-65 3xHigh Mobility Group-box1, HMG (high mobility group) box protein (.1) Lus10001909 [exp] 266 / 1e-86 AT4G11080 496 / 2e-173 3xHigh Mobility Group-box1, HMG (high mobility group) box protein (.1) Lus10030738 [exp] 64 / 2e-12 AT1G20693 185 / 7e-61 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 02, HIGH MOBILITY GROUP BETA 1, high mobility group B2 (.1.2.3) Lus10012252 [exp] 61 / 8e-12 AT1G20693 164 / 1e-53 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 02, HIGH MOBILITY GROUP BETA 1, high mobility group B2 (.1.2.3) Lus10016025 [exp] 61 / 2e-11 AT1G20693 192 / 7e-64 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 02, HIGH MOBILITY GROUP BETA 1, high mobility group B2 (.1.2.3) Lus10028298 [exp] 61 / 3e-11 AT3G51880 134 / 6e-40 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D1, high mobility group B1 (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G138000 [exp] 261 / 1e-84 AT4G11080 302 / 1e-97 3xHigh Mobility Group-box1, HMG (high mobility group) box protein (.1) Potri.001G093700 [exp] 232 / 2e-73 AT4G11080 325 / 2e-106 3xHigh Mobility Group-box1, HMG (high mobility group) box protein (.1) Potri.005G101400 [exp] 67 / 7e-14 AT1G20696 112 / 2e-32 high mobility group B3 (.1.2.3) Potri.010G189900 [exp] 62 / 6e-12 AT3G51880 129 / 3e-38 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D1, high mobility group B1 (.1.2.3.4) Potri.005G252600 [exp] 61 / 1e-11 AT1G20696 147 / 7e-46 high mobility group B3 (.1.2.3) Potri.002G009000 [exp] 59 / 6e-11 AT1G20696 146 / 8e-46 high mobility group B3 (.1.2.3) Potri.008G067400 [exp] 58 / 2e-10 AT3G51880 100 / 4e-27 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D1, high mobility group B1 (.1.2.3.4) Potri.001G315200 [exp] 48 / 2e-06 AT1G04880 376 / 6e-128 HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain (.1) Potri.017G055200 [exp] 47 / 6e-06 AT1G04880 364 / 3e-122 HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain (.1) Potri.007G000900 [exp] 44 / 4e-05 AT5G23420 156 / 8e-48 high-mobility group box 6 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0114 [flax] [poplar] HMG-box PF00505 [flax] [poplar] HMG_box HMG (high mobility group) box
Representative CDS sequence Show only first row Show all	>Lus10023091 pacid=23170350 polypeptide=Lus10023091 locus=Lus10023091.g ID=Lus10023091.BGIv1.0 annot-version=v1.0 ATGGAGTTGCTTGAACAGTATGTGCAGTTCATGAATGAAGCTGATGATCAAGGGACCAAGAAGACTAAGAAAGAGAGAGATCCATTGAAGCCAAAGCAAC CAATGTCAGCTTTTTTCATCTTCTCTAATGAGAGAAGGGCTGCCCTGGTTACTGAGACTGAGAACAAGACTGAGAACAAGAGTGTTACTGAGTTTGCGAA GCTTGCTGGTGAGGAATGGAAAACCATGACAGAGAAGCAGAAAGCACCATATGAAGAGATGGCAAAGAAGAACAAGGAGAAATACTTGATTGAGATGGAG GCTTATAAGCAGAAAAAGGAGGAAGAAGTCATGAATGTGAAGAAGGAAGAGGAAGAAGTGCTGAAGCTTCAAAAGCAGGAAGCAATGCAACTGCTAAGGA AGAAGGAGAAAACAGACAACATAATCCAGAAAACAAAAGAGGAAATGCAGAAGAAAAAGAAGAGCAAGAATATTGCTGCAGATCCTAACAAGCCAAAGAA GCCTGCAACCTCTCTTCTCTTGTTCAGCAAGGAAGAAAGGAAAAAATTAATGCTGCAGCAGCGGCCGGGAAGCAACAACTCTACCCTGACTGCACAAATC TCTGTTAAGTGGAAGGAACTGAATGAAGAGGAGAGGAAGATATGGAATGCAAAAGCTGCGGAAGGCATGGAGGTTTACAAGAAGCAAATGGAAGAGTACA ACGAGACACACGGCTCCCAAAATCCACACTAG
AA sequence Show only first row Show all	>Lus10023091 pacid=23170350 polypeptide=Lus10023091 locus=Lus10023091.g ID=Lus10023091.BGIv1.0 annot-version=v1.0 MELLEQYVQFMNEADDQGTKKTKKERDPLKPKQPMSAFFIFSNERRAALVTETENKTENKSVTEFAKLAGEEWKTMTEKQKAPYEEMAKKNKEKYLIEME AYKQKKEEEVMNVKKEEEEVLKLQKQEAMQLLRKKEKTDNIIQKTKEEMQKKKKSKNIAADPNKPKKPATSLLLFSKEERKKLMLQQRPGSNNSTLTAQI SVKWKELNEEERKIWNAKAAEGMEVYKKQMEEYNETHGSQNPH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G11080		3xHMG-box1	3xHigh Mobility Group-box1, HM...		Lus10023091 [exp]	0	1
AT3G12380		ATARP5	actin-related protein 5 (.1.2)		Lus10040281 [exp]	2.6	0.8823
AT3G07590			Small nuclear ribonucleoprotei...		Lus10003727 [exp]	3.0	0.9078
					Lus10029394 [exp]	5.5	0.8916
AT2G47640			Small nuclear ribonucleoprotei...		Lus10026556 [exp]	6.0	0.9014
AT2G30260		U2B''	U2 small nuclear ribonucleopro...		Lus10042240 [exp]	8.7	0.8933
AT1G41880			Ribosomal protein L35Ae family...		Lus10028254 [exp]	10.6	0.9016
AT3G49430		SRP34A, SR34a, ...	Serine/Arginine-Rich Protein S...		Lus10015564 [exp]	12.3	0.8755
AT2G02470	Alfin	AL6	alfin-like 6 (.1.2)		Lus10026269 [exp]	13.9	0.8633
AT5G66240			Transducin/WD40 repeat-like su...		Lus10017157 [exp]	16.5	0.8330
AT1G75660		AtXRN3, XRN3	5'-3' exoribonuclease 3 (.1)		Lus10020397 [exp]	19.9	0.8918

Compare expression of checked genes

Lus10023091 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.