Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033953 [exp] 255 / 9e-78 AT5G36930 347 / 2e-102 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10007822 [exp] 207 / 1e-60 AT4G11170 86 / 7e-17 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10007831 [exp] 201 / 5e-58 AT1G27180 332 / 7e-96 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10007829 [exp] 196 / 3e-56 AT5G36930 330 / 2e-94 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10007823 [exp] 187 / 3e-53 AT1G27170 322 / 3e-92 transmembrane receptors;ATP binding (.1.2) Lus10004747 [exp] 186 / 1e-52 AT5G36930 342 / 3e-99 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10007830 [exp] 170 / 5e-48 AT5G36930 120 / 5e-28 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10007821 [exp] 167 / 2e-46 AT5G36930 339 / 4e-98 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10007825 [exp] 162 / 2e-44 AT5G36930 318 / 2e-89 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10023092 pacid=23170405 polypeptide=Lus10023092 locus=Lus10023092.g ID=Lus10023092.BGIv1.0 annot-version=v1.0 ATGAAGCTTCACTACATGAGGAGGATAGTTATGGTCGGAAGTCCGAGCACCACCATGCTACCATCATCCCTCACTAAGCTAGAACTCCACACTGTACATT CGGACCGAATTCCGACTCTAGAGAATCTGAGCAACTTGACCGAATTGGGAATTCGTCGCTGTCCTAATCTTCAAGAGGTCCAAGGTCTCGGAGGGCTGAA ATCATTGCAGATTCTCACTATATACGTTGCTCCGAAATTGACTCGTATTGATGGCCTTGAGAATCTCTTGTCTAATTCTACTTCCAAGTGCAGGTTGAAA GAGTTGTGCATATATGAATGTCCTCTTCTTCGTGGAGTACTAACATTCGAAAGAGAGATAGATCAAATTGAATCTTTACTCAAACTGGAATTCCAGTACA GTTCCAAGTTCCCAATGCTCAAGGAATTAAAGATAAAGGGAAGCAGTTACGAGGGATTAACGAGCGAGCAACAGCATCAGCTACTAGAAGGGATTGGCAA TCTTGAAGAGTTGGAGGAACTAGAGGTTTACGAATTTCCAAAAGTGGACGAATTGCCGAAAGTGGAGAGACTACCTTGGCTGTCAAGGCTAGGCAAGCTG AAGAAATTAAGACTGGAAGACCTTCCAGCTTTGCGGGAGATTGCGGGACTTGGAGATTTGAAGTCCTTAAAAGAGTTACTCATTAGGACTTGCTCGTCGT TGGAAAGACTGCTCATCTCAGACCTACCATTTGCTACCATGGATGGTATATATTTGGATTTGAAAGGATTCAACAACTTGATTGACGTTGATTCTGATCT TTCGCCCCTCACCACCGAAGGGGCCGGTCTAGGTAAACTTAAAGCAACCATCTACTGGCCACAACCATCTACTGGCCACAACATATTCACGGTAATTTAA
AA sequence Show only first row Show all	>Lus10023092 pacid=23170405 polypeptide=Lus10023092 locus=Lus10023092.g ID=Lus10023092.BGIv1.0 annot-version=v1.0 MKLHYMRRIVMVGSPSTTMLPSSLTKLELHTVHSDRIPTLENLSNLTELGIRRCPNLQEVQGLGGLKSLQILTIYVAPKLTRIDGLENLLSNSTSKCRLK ELCIYECPLLRGVLTFEREIDQIESLLKLEFQYSSKFPMLKELKIKGSSYEGLTSEQQHQLLEGIGNLEELEELEVYEFPKVDELPKVERLPWLSRLGKL KKLRLEDLPALREIAGLGDLKSLKELLIRTCSSLERLLISDLPFATMDGIYLDLKGFNNLIDVDSDLSPLTTEGAGLGKLKATIYWPQPSTGHNIFTVI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10023092 [exp]	0	1
AT1G27180			disease resistance protein (TI...		Lus10023093 [exp]	1.0	0.8882
AT3G23610		DSPTP1	dual specificity protein phosp...		Lus10021940 [exp]	4.2	0.8304
AT4G01400			unknown protein		Lus10012607 [exp]	6.7	0.8022
AT3G12620			Protein phosphatase 2C family ...		Lus10040346 [exp]	8.9	0.7747
AT5G38510			Rhomboid-related intramembrane...		Lus10000628 [exp]	9.7	0.8544
AT2G46220			Uncharacterized conserved prot...		Lus10010135 [exp]	9.7	0.8076
AT1G26850			S-adenosyl-L-methionine-depend...		Lus10042197 [exp]	11.0	0.8106
AT4G12010			Disease resistance protein (TI...		Lus10015648 [exp]	12.6	0.7875
					Lus10008159 [exp]	13.9	0.6904
AT4G11880	MADS	AGL14	AGAMOUS-like 14 (.1)		Lus10006716 [exp]	19.8	0.8031

Compare expression of checked genes

Lus10023092 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.