Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06580 583 / 0 GAL1, GALK GALACTOSE KINASE 1, Mevalonate/galactokinase family protein (.1) AT4G16130 53 / 4e-07 ATISA1, ARA1 arabinose kinase (.1) AT3G42850 52 / 1e-06 Mevalonate/galactokinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037789 [exp] 650 / 0 AT3G06580 765 / 0.0 GALACTOSE KINASE 1, Mevalonate/galactokinase family protein (.1) Lus10002740 [exp] 618 / 0 AT3G06580 728 / 0.0 GALACTOSE KINASE 1, Mevalonate/galactokinase family protein (.1) Lus10017072 [exp] 612 / 0 AT3G06580 728 / 0.0 GALACTOSE KINASE 1, Mevalonate/galactokinase family protein (.1) Lus10016320 [exp] 432 / 4e-150 AT3G06580 496 / 6e-176 GALACTOSE KINASE 1, Mevalonate/galactokinase family protein (.1) Lus10016321 [exp] 284 / 2e-93 AT3G06580 338 / 8e-115 GALACTOSE KINASE 1, Mevalonate/galactokinase family protein (.1) Lus10026983 [exp] 49 / 7e-06 AT4G16130 1013 / 0.0 arabinose kinase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G148100 [exp] 650 / 0 AT3G06580 792 / 0.0 GALACTOSE KINASE 1, Mevalonate/galactokinase family protein (.1) Potri.008G102800 [exp] 638 / 0 AT3G06580 793 / 0.0 GALACTOSE KINASE 1, Mevalonate/galactokinase family protein (.1) Potri.018G145700 [exp] 62 / 1e-09 AT4G16130 1435 / 0.0 arabinose kinase (.1) Potri.018G003100 [exp] 56 / 8e-08 AT4G16130 1660 / 0.0 arabinose kinase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0677 [flax] [poplar] GHMP_C PF08544 [flax] [poplar] GHMP_kinases_C GHMP kinases C terminal CL0329 [flax] [poplar] S5 PF10509 [flax] [poplar] GalKase_gal_bdg Galactokinase galactose-binding signature CL0329 [flax] [poplar] S5 PF00288 [flax] [poplar] GHMP_kinases_N GHMP kinases N terminal domain
Representative CDS sequence Show only first row Show all	>Lus10023094 pacid=23170389 polypeptide=Lus10023094 locus=Lus10023094.g ID=Lus10023094.BGIv1.0 annot-version=v1.0 ATGGGAGATCAACACGACGAACTCACCATCCCATTTTACTCCTCCCTCGATTCCGTCTACAGCTCCGGCGGTTCCGATGAGCTACAAGAAGCTAAACTCC GGTTGGAGGAATTGAAGTCCAAGTTCGTCGAGGTCTTCGGCAATCCGCCCGACGTCTATTCTCGCTCTCCTGGAAGGGTGAATTTGATAGGGGAGCACAT TGCCAATGAAGGATACTCGGTGTTGTCGATGGCGATACGACGTGATATGATTGTAGCGATCCGTAAGAACAACAAGGAAGGGGAGAAACTCGTTCGTATC GCCAATGTTAACGAGAAGAAATATTCAATGTGTACTTACCCTGCCAATTCTGACCAGAAAATTGACTTGAAAAATCATGAATGGGGTCACTATTTTATAT GCGGGTATAAAGGTTATTGCGAGTACGCCAAAGGCAAAAGGAAAGACGTAGGAGCCTCAGTTGGGGACAATGTCTTCTTTGATGAATCAGTCGGCCTTGA TGTTATGGTTGATGGCACTGTTCCAACTGGTTCTGGATTTTCGAGCTCTACTGCACTTGTTTGTTCATCGACCATCTCACTTATGGCTGCCTTTGGCGTC ACCTTCCCAAAGAAAGAAGTTGCTCAGCTGACATGTGACTCTGAAAGACACCTAGGAATCCAACCTGGATTCGGAATAGACCAGGAAATATCTGCAATGG CTAAAGCCGGATATGCTGAACTGATAGAGTTCAACCCAGTTCGATCAACTGATGTCCAACTTCCAAAAGGCGGCACCTTTGTTATAGCACATTCTTTGGT CAACCCTAACAAATCAGCCACTGCTTCAACTAACTACAACACCAGAACTGTCGAGTGCCGCTTAGCTGCTATTATACTAGGAATACATCTGGGAATGAAA GCAGAGGAGGCAAGATCCAAAGTGAAGACTCTGGGTGACGTGGAAGGGCTGTGTGTATCTTTTGCTAACAAACGTGGTTCATCATTTGATCCTCTTGTTT CTGTTAAGGAATTCTTGAAGGAAGTACCTTATACAGCTGAACAAATCGAGAACATAATCAAGGAAAAGTTGGTCTCACTGTTTAGTCGTTGCCAGTCCTC TCTGGATGTTCTTAACTCAACCACCCAGTTCAAGTTACATCAGAGAGCTAGTCATGTTTACTCGGAAGCTAAGAGGGTGCAGGATTTCAAGTACACCTCG CTAGCAAATCTAAGCGATGAGGAGAAGCTGAAGAAGGTAGGGCAGCTAATGAATGACAGTCACCAGAGCTGTAACATTCTTTACGAGTCGAGCTGCCCGG AGATGGAAGAACTAGTGAAAGTGTGCAGAGGGAACGGAGCGTTGGGGGCGAGGCTTACCGGAGGCGGATGGGGCGGTTGTGCGGTTGCTCTGGTGAAGGA TGACATCGTCCCACAGTTCATCCAGAATCTCAAGGAAAAGTTCTATCAGTTGAGGATTGAGAAAGGAGTAGTGGATAAGAGTGATGTTGGGAACTGTGTG TTTGCTTCAAAGCCATCCTGTGGTGCTGCAATTCTCAAGTTGTAA
AA sequence Show only first row Show all	>Lus10023094 pacid=23170389 polypeptide=Lus10023094 locus=Lus10023094.g ID=Lus10023094.BGIv1.0 annot-version=v1.0 MGDQHDELTIPFYSSLDSVYSSGGSDELQEAKLRLEELKSKFVEVFGNPPDVYSRSPGRVNLIGEHIANEGYSVLSMAIRRDMIVAIRKNNKEGEKLVRI ANVNEKKYSMCTYPANSDQKIDLKNHEWGHYFICGYKGYCEYAKGKRKDVGASVGDNVFFDESVGLDVMVDGTVPTGSGFSSSTALVCSSTISLMAAFGV TFPKKEVAQLTCDSERHLGIQPGFGIDQEISAMAKAGYAELIEFNPVRSTDVQLPKGGTFVIAHSLVNPNKSATASTNYNTRTVECRLAAIILGIHLGMK AEEARSKVKTLGDVEGLCVSFANKRGSSFDPLVSVKEFLKEVPYTAEQIENIIKEKLVSLFSRCQSSLDVLNSTTQFKLHQRASHVYSEAKRVQDFKYTS LANLSDEEKLKKVGQLMNDSHQSCNILYESSCPEMEELVKVCRGNGALGARLTGGGWGGCAVALVKDDIVPQFIQNLKEKFYQLRIEKGVVDKSDVGNCV FASKPSCGAAILKL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G06580		GAL1, GALK	GALACTOSE KINASE 1, Mevalonate...		Lus10023094 [exp]	0	1
AT4G12910		SCPL20	serine carboxypeptidase-like 2...		Lus10020206 [exp]	14.6	0.8921
					Lus10010480 [exp]	14.8	0.8855
					Lus10018446 [exp]	24.5	0.8210
					Lus10038209 [exp]	25.4	0.8690
AT4G11410			NAD(P)-binding Rossmann-fold s...		Lus10032280 [exp]	27.6	0.8677
AT4G32270			Ubiquitin-like superfamily pro...		Lus10006187 [exp]	29.8	0.7845
					Lus10001854 [exp]	33.3	0.8675
AT5G12460			Protein of unknown function (D...		Lus10003179 [exp]	36.7	0.8668
					Lus10003763 [exp]	39.6	0.8668
					Lus10034359 [exp]	42.3	0.8668

Compare expression of checked genes

Lus10023094 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.