Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G26600 697 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G55920 629 / 0 OLI2 OLIGOCELLULA 2, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT3G13180 109 / 5e-25 NOL1/NOP2/sun family protein / antitermination NusB domain-containing protein (.1) AT5G26180 93 / 1e-19 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT4G40000 82 / 7e-16 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT2G22400 81 / 1e-15 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G06560 69 / 7e-12 NOL1/NOP2/sun family protein (.1) AT4G17590 71 / 6e-10 unknown protein AT5G66180 44 / 0.0003 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032368 [exp] 1003 / 0 AT4G26600 736 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10016622 [exp] 108 / 1e-24 AT3G13180 759 / 0.0 NOL1/NOP2/sun family protein / antitermination NusB domain-containing protein (.1) Lus10020217 [exp] 91 / 7e-19 AT2G22400 975 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10026452 [exp] 80 / 1e-15 AT5G26180 567 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10026840 [exp] 79 / 9e-15 AT4G40000 954 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10022523 [exp] 74 / 3e-14 AT3G13180 323 / 1e-107 NOL1/NOP2/sun family protein / antitermination NusB domain-containing protein (.1) Lus10025004 [exp] 74 / 9e-14 AT5G26180 566 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10007337 [exp] 59 / 9e-09 AT1G06560 725 / 0.0 NOL1/NOP2/sun family protein (.1) Lus10020761 [exp] 54 / 3e-07 AT1G06560 714 / 0.0 NOL1/NOP2/sun family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G369600 [exp] 723 / 0 AT4G26600 696 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.001G368500 [exp] 110 / 2e-25 AT3G13180 770 / 0.0 NOL1/NOP2/sun family protein / antitermination NusB domain-containing protein (.1) Potri.007G096100 [exp] 80 / 2e-15 AT2G22400 1012 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.006G224000 [exp] 79 / 2e-15 AT5G26180 585 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.005G204900 [exp] 64 / 1e-10 AT1G06560 758 / 0.0 NOL1/NOP2/sun family protein (.1) Potri.007G056800 [exp] 50 / 3e-06 AT5G66180 502 / 2e-178 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01189 [flax] [poplar] Methyltr_RsmB-F 16S rRNA methyltransferase RsmB/F
Representative CDS sequence Show only first row Show all	>Lus10023095 pacid=23170305 polypeptide=Lus10023095 locus=Lus10023095.g ID=Lus10023095.BGIv1.0 annot-version=v1.0 ATGGCACCAGCTGTAGTTACGAAGAAGAAGGCCTCAAAGCCAACCAAAGCCCCACTTCCGAAGAAGCAAAAGGCTGGTAACCTCTTCACTGAGAAACGCC GAAAGAAGGCCGCCGTTTCTGACGATTCTGATGATTCCGATGGAGAAATAGAACACCAGGAAGAGTTTTCGGACGACGACGATGATGTTGAGCAAGGCTC TGCTTCTGGGTCTGACCTTCTTTCCGGGGATGATGATGGTGATGATGATCCTCTAGCAGATGATTTTCTCCAATCAACTGATGACGAAGAAGAAGAAAAT GAAGGCACCGAGTCTGGTCCTGGTTCAGACTCGGATTCAGAAGAAGATGACCTAGAGAAGCAGTCTAGGGCTATAGATATCCGCACAAGAAAGGAGCAGA AGGATGCCGATGACGAGGTCATAACCAACATTGCCGAGGAATCTGACGAGTTCAGGCTTCCTACCGATGAGGAACTCGAAGCAGAGGCAAATAACCCTCC TGATCTTCAGAATCTCCAAAGAAGAATCAAAGAAATTGCTAGAGTTCTTTCAAATTTTACCGCTCTGAAGCAAGAAGGAGCTACTAGGAAGGATTACATT GAACAGCTTAAGAAGGATCTAAGCTCGTATTATGGTTATAACGATTTCCTTATTGAAGTTTTGGTACAGATGTTTCCAGTTAATGAACTCTTGGAACTTA TTGAAGCTTTTGAAAAGCCAAGGCCTATTTGCTTACGAACTAATACTTTAAAGACTAGAAGACGTGATTTGGCTGATGTTCTGTTGAATAGAGGAGTAAA CTTAGATCCCTTGAGTAAGTGGTCAAAGGTTGGACTGGTTGTGTATGATTCTCAAGTGCCAATTGGTGCCACTCCCGAGTATATGGCTGGTTTGTACATG CTACAAAGTGCAAGTTCCTTTTTGCCTGTCATGGCGCTGGCTCCTCAAGAGAAGGAGAAGATTGTTGATATGGCGGCTGCACCTGGTGGTAAAACAACAT ATATCGCGGCTCTAATGAAAAATACAGGAATGATATATGCCAACGAGATGAAGGAACCAAGGCTTAAGTCACTGACTGCAAATTTGAATAGGATGGGGGT CTCGAACACCATAGTTTGTAACTATGATGGCAGAGAGTTGCCCAAGGTCTTGGGTGTCAATACTGTTGATAGAGTATTGCTAGATGCTCCATGCAGTGGA ACAGGGGTTATATCAAAAGATGAGTCAGTAAAGACATCCAAAAGCGCAGACGATATACAAAAAAATGCCCAACTACAAAAGCAATTAATACTGGATGCAA TAGACTTGGTTAATGCAAATTCACAATCTGGTGGATATATTGTATATTCTACATGCTCCATGATGGTTGCTGAGAATGAAGCTGTCATTGATTATGCTCT GAAGAAGAGGAATGTTAAACTTGTACCATGTGGGCTTGATTTCGGCCGTCCAGGGTTTACGAAATTCAGAGAGCTCCGGTTTCATCCATCCTTAGAACAG ACTAGACGGTTCTATCCTCATGTAAACAACATGGATGGGTTTTTTGTGGCAAAGCTGAAGAAAGTTAGTAATACAATACCCACCGGTGGAGCCTCGACAG CTGCTGAAGAGTCTGTTGAGGAAGCTCCTGTGGCTAGCAACAATGGCGATGTCGTGAAGGAAACTGTGAAGGCTGTGAAGGGAGATGGTCCCAAGAAAAG TAATGCAGGTGCAAAAACGAAGGTAGACGATAACGGTAAAGAGGCGGCAGCATCAAAACCTGCGCAGAAAAGAACGAAAAGAAAGTTCCCATCCCAAGAG GAAATCGCAAAAGTCAGGGAGGAGAAGAGACAAAAACTAAGGGAGGCAAAAAGAAAATCACAAGGGAGCAAGTAG
AA sequence Show only first row Show all	>Lus10023095 pacid=23170305 polypeptide=Lus10023095 locus=Lus10023095.g ID=Lus10023095.BGIv1.0 annot-version=v1.0 MAPAVVTKKKASKPTKAPLPKKQKAGNLFTEKRRKKAAVSDDSDDSDGEIEHQEEFSDDDDDVEQGSASGSDLLSGDDDGDDDPLADDFLQSTDDEEEEN EGTESGPGSDSDSEEDDLEKQSRAIDIRTRKEQKDADDEVITNIAEESDEFRLPTDEELEAEANNPPDLQNLQRRIKEIARVLSNFTALKQEGATRKDYI EQLKKDLSSYYGYNDFLIEVLVQMFPVNELLELIEAFEKPRPICLRTNTLKTRRRDLADVLLNRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGLYM LQSASSFLPVMALAPQEKEKIVDMAAAPGGKTTYIAALMKNTGMIYANEMKEPRLKSLTANLNRMGVSNTIVCNYDGRELPKVLGVNTVDRVLLDAPCSG TGVISKDESVKTSKSADDIQKNAQLQKQLILDAIDLVNANSQSGGYIVYSTCSMMVAENEAVIDYALKKRNVKLVPCGLDFGRPGFTKFRELRFHPSLEQ TRRFYPHVNNMDGFFVAKLKKVSNTIPTGGASTAAEESVEEAPVASNNGDVVKETVKAVKGDGPKKSNAGAKTKVDDNGKEAAASKPAQKRTKRKFPSQE EIAKVREEKRQKLREAKRKSQGSK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G26600			S-adenosyl-L-methionine-depend...		Lus10023095 [exp]	0	1
AT3G11964			RNA binding;RNA binding (.1)		Lus10016216 [exp]	2.0	0.9625
AT1G10490			Domain of unknown function (DU...		Lus10006807 [exp]	2.8	0.9610
AT3G21540			transducin family protein / WD...		Lus10012475 [exp]	3.5	0.9366
AT2G18900			Transducin/WD40 repeat-like su...		Lus10003637 [exp]	3.9	0.9568
AT2G18220			Noc2p family (.1)		Lus10027010 [exp]	5.0	0.9458
AT3G57660		NRPA1	nuclear RNA polymerase A1 (.1)		Lus10040493 [exp]	5.3	0.9424
AT1G15440		ATPWP2	\(PERIODIC TRYPTOPHAN PROTEIN ...		Lus10034114 [exp]	6.0	0.9483
AT1G63810			unknown protein		Lus10026014 [exp]	7.3	0.9444
AT5G26860		LON1, LON_ARA_A...	lon protease 1 (.1)		Lus10010919 [exp]	8.1	0.9377
AT5G09840			Putative endonuclease or glyco...		Lus10033511 [exp]	10.2	0.9354

Compare expression of checked genes

Lus10023095 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.