Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42800 173 / 1e-50 M318, TT3, DFR dihydroflavonol 4-reductase (.1) AT2G45400 164 / 2e-47 BEN1 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G61720 163 / 3e-47 BAN BANYULS, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G27250 160 / 3e-46 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT4G35420 144 / 3e-40 TKPR1, DRL1 tetraketide alpha-pyrone reductase 1, dihydroflavonol 4-reductase-like1 (.1) AT5G19440 130 / 4e-35 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G25460 129 / 2e-34 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G09500 126 / 5e-34 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) AT1G09510 127 / 9e-34 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G51410 125 / 7e-33 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032370 [exp] 559 / 0 AT1G61720 171 / 3e-50 BANYULS, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10032369 [exp] 334 / 2e-114 AT5G42800 141 / 3e-39 dihydroflavonol 4-reductase (.1) Lus10023097 [exp] 243 / 3e-80 AT1G09510 86 / 2e-20 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10041031 [exp] 169 / 2e-49 AT5G42800 499 / 2e-178 dihydroflavonol 4-reductase (.1) Lus10020072 [exp] 166 / 2e-48 AT1G61720 404 / 2e-141 BANYULS, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10004029 [exp] 164 / 2e-47 AT2G45400 283 / 7e-94 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10004028 [exp] 158 / 3e-45 AT2G45400 290 / 3e-96 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10004030 [exp] 155 / 5e-44 AT2G45400 267 / 2e-87 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10021294 [exp] 153 / 6e-43 AT4G27250 351 / 4e-120 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G093300 [exp] 416 / 6e-146 AT5G42800 199 / 2e-60 dihydroflavonol 4-reductase (.1) Potri.003G138400 [exp] 412 / 2e-144 AT5G42800 202 / 9e-62 dihydroflavonol 4-reductase (.1) Potri.001G415500 [exp] 192 / 4e-58 AT4G27250 422 / 3e-148 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.004G030700 [exp] 177 / 2e-52 AT1G61720 443 / 2e-156 BANYULS, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.011G031700 [exp] 176 / 5e-52 AT1G61720 428 / 1e-150 BANYULS, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.002G147500 [exp] 163 / 3e-47 AT2G45400 311 / 8e-105 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.002G147800 [exp] 163 / 3e-47 AT2G45400 313 / 2e-105 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.002G148000 [exp] 162 / 6e-47 AT2G45400 320 / 4e-108 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.002G147702 [exp] 160 / 2e-46 AT2G45400 317 / 4e-107 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.002G147701 [exp] 160 / 3e-46 AT2G45400 341 / 1e-116 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01073 [flax] [poplar] 3Beta_HSD 3-beta hydroxysteroid dehydrogenase/isomerase family
Representative CDS sequence Show only first row Show all	>Lus10023096 pacid=23170386 polypeptide=Lus10023096 locus=Lus10023096.g ID=Lus10023096.BGIv1.0 annot-version=v1.0 ATGGATAAATCCCAAACCAAAGTCTGCGTCACCGGCGGCACCGGCTACATCGGCTCTTGTCTTGTCAAGAAACTCCTGCAAAACGGCTACACAGTCCACG CCACTCTCCGAAGTCTCGATGACAAAGCTAAAGTGGGACTGTTGACTTCCCTCCCGAACGCCGACACCAACTTGGTACTGTTCAAAGCCGACATCTACAA CCCGGACCAGTTCGAGTCAGCAATCGACGGCTGCCACTCCGTCTTCCACGTGGCGTACCCTCTCCAGCACCAGTCCGACAGCGCTACGTACAAGGACAGG ATTGAAGCCATGGCCGAAGGGTCCAAGAGAATAGCTGAGTCCTGTGTTAAATCGGGGACGGTCAAGCGGCTGATTTACACTGCCTCCGTTATGGCTGCTT CACCGCTGTTTGATGACGGCAGTGAGTATGGGCCCACCGTCGACGAGTCGTGCTGGACGCCTCTCCACGTGTCCTTCCAGTACAGCGATCCTTTTACTTT GGATTATACGAGGGGAAAGACGATTGCAGAGAAAGAGGTGCTAAAGTTCAACGAAACCTCCGCCGGCAGCCAACGGAACCTGGAAGTCGTCACCCTAGCC ACCGGATTGGTCGGCGGCGAAACGATCCTTTCGCAAGTGCCGTTGAGCGCCGCCGTCATAATTTTTCCGGCACCGGGAACTTGTTCAGTTACAACGAACC TGTTCGGTTACAACCACGGGCTGATGTTCATGCAGGAGCTCTTGGGGTCTGTGCCGCTTGTCCACGTGGAGGACGTGTGTGAGGCGCTCGTTTTCTGCAT GGAAAAGAAGACGTCCCTCAAAGGCAGGTTCGTGTGCGCAGCTGGCACCCTGAGCGTGAGGGAAATCGCCACGTACATCCGAGACCACCACCCGGAGCTC CACGTCGATGCCACGCTAATGGGAGAAGGTGGAAAAGAGATAGAAGTTGATAATTCGAAGCTGAAGAAGATGGGATTTAGTTACAAGTATGATACCAGGG GAATTATCGAGGAAAGCTTAGAGTGTGCGAAGCGGCTTGGTGCTCTTCCTGATCTTTGA
AA sequence Show only first row Show all	>Lus10023096 pacid=23170386 polypeptide=Lus10023096 locus=Lus10023096.g ID=Lus10023096.BGIv1.0 annot-version=v1.0 MDKSQTKVCVTGGTGYIGSCLVKKLLQNGYTVHATLRSLDDKAKVGLLTSLPNADTNLVLFKADIYNPDQFESAIDGCHSVFHVAYPLQHQSDSATYKDR IEAMAEGSKRIAESCVKSGTVKRLIYTASVMAASPLFDDGSEYGPTVDESCWTPLHVSFQYSDPFTLDYTRGKTIAEKEVLKFNETSAGSQRNLEVVTLA TGLVGGETILSQVPLSAAVIIFPAPGTCSVTTNLFGYNHGLMFMQELLGSVPLVHVEDVCEALVFCMEKKTSLKGRFVCAAGTLSVREIATYIRDHHPEL HVDATLMGEGGKEIEVDNSKLKKMGFSYKYDTRGIIEESLECAKRLGALPDL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G42800		M318, TT3, DFR	dihydroflavonol 4-reductase (....		Lus10023096 [exp]	0	1
AT1G75100		JAC1	J-domain protein required for ...		Lus10032709 [exp]	2.0	0.8656
AT4G23990		ATCSLG3	ARABIDOPSIS THALIANA CELLULOSE...		Lus10023057 [exp]	4.0	0.7907
AT2G18660		AtPNP-A, PNP-A,...	plant natriuretic peptide A (....		Lus10020131 [exp]	5.2	0.7687
AT4G21120		CAT1, AAT1	CATIONIC AMINO ACID TRANSPORTE...		Lus10001581 [exp]	8.4	0.7866
AT5G22750		RAD5A, RAD5	DNA/RNA helicase protein (.1)		Lus10019523 [exp]	8.5	0.7782
AT1G52870			Peroxisomal membrane 22 kDa (M...		Lus10043097 [exp]	9.2	0.7856
AT3G15760			unknown protein		Lus10005715 [exp]	14.3	0.8106
AT1G65770		AMR1	ascorbic acid mannose pathway ...		Lus10028385 [exp]	15.4	0.7532
AT3G05640			Protein phosphatase 2C family ...		Lus10016831 [exp]	20.5	0.7445
AT1G14790		ATRDRP1, RDR1	RNA-dependent RNA polymerase 1...		Lus10034262 [exp]	21.1	0.6735

Compare expression of checked genes

Lus10023096 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.