Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09510 72 / 5e-15 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G61720 71 / 1e-14 BAN BANYULS, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G42800 69 / 4e-14 M318, TT3, DFR dihydroflavonol 4-reductase (.1) AT5G19440 68 / 1e-13 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G51410 68 / 1e-13 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G27250 67 / 1e-13 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT1G25460 67 / 1e-13 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G09480 66 / 7e-13 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G09500 65 / 7e-13 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) AT1G09490 64 / 1e-12 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032370 [exp] 248 / 9e-83 AT1G61720 171 / 3e-50 BANYULS, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10023096 [exp] 234 / 3e-77 AT5G42800 173 / 1e-50 dihydroflavonol 4-reductase (.1) Lus10032369 [exp] 229 / 5e-76 AT5G42800 141 / 3e-39 dihydroflavonol 4-reductase (.1) Lus10004029 [exp] 79 / 1e-17 AT2G45400 283 / 7e-94 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10041031 [exp] 78 / 3e-17 AT5G42800 499 / 2e-178 dihydroflavonol 4-reductase (.1) Lus10030277 [exp] 68 / 3e-15 AT2G45400 89 / 1e-22 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10004030 [exp] 72 / 5e-15 AT2G45400 267 / 2e-87 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10020072 [exp] 72 / 5e-15 AT1G61720 404 / 2e-141 BANYULS, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10009955 [exp] 71 / 8e-15 AT1G51410 548 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G138400 [exp] 161 / 6e-49 AT5G42800 202 / 9e-62 dihydroflavonol 4-reductase (.1) Potri.001G093300 [exp] 159 / 7e-48 AT5G42800 199 / 2e-60 dihydroflavonol 4-reductase (.1) Potri.002G147601 [exp] 85 / 7e-20 AT2G45400 341 / 1e-116 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.002G147701 [exp] 85 / 7e-20 AT2G45400 341 / 1e-116 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.002G147702 [exp] 84 / 2e-19 AT2G45400 317 / 4e-107 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.002G147400 [exp] 82 / 6e-19 AT2G45400 344 / 7e-118 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.005G229500 [exp] 77 / 5e-17 AT5G42800 522 / 0.0 dihydroflavonol 4-reductase (.1) Potri.002G148000 [exp] 77 / 7e-17 AT2G45400 320 / 4e-108 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.001G415500 [exp] 76 / 1e-16 AT4G27250 422 / 3e-148 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.002G147500 [exp] 76 / 1e-16 AT2G45400 311 / 8e-105 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01370 [flax] [poplar] Epimerase NAD dependent epimerase/dehydratase family
Representative CDS sequence Show only first row Show all	>Lus10023097 pacid=23170313 polypeptide=Lus10023097 locus=Lus10023097.g ID=Lus10023097.BGIv1.0 annot-version=v1.0 ATGGAGAAATCTCAAACCAAAGTCTGTGTCACCGGCGGCACCGGTTACATCGGATCATGCCTGGTCAAGAAATTGCTTGAAAATGGCTACACAGTCCACG CCACTCTCCGAAATCTTGATGACAAAGCTAAAGTAGGACTGTTGACTTCCCTCCCAAACGCCGAAACCAATTTGCTACTGTTCAAGGCCAACATCTACAA CCTGGAGGAGTCCAGTCAACAATCGACGGCTGCCACTTCGTTTTCCACGCGGCGTACCCACTCCAGCACCACTCCGACAGCTCCACGGTTAGACAAGGTT GAAGCGATGGCGGAAGGGTCGAAGAGGATAACGGAGTCGTGCGTTAAATCTGGAACCGTTAAGCGGCTGATTTACACTGGCTCGGTTACGGCTGCTTCGC CGTTATTTGACGACGGGGTTGGCTACGGGGCCACCGTCGATGAATCGTGTTGGACTCCTCTCCGCCTCTCGTTTCATCAAAGCGATCCATTCACCCTGAT TGATCACATGATGGTGCACAGGGAAGACTAA
AA sequence Show only first row Show all	>Lus10023097 pacid=23170313 polypeptide=Lus10023097 locus=Lus10023097.g ID=Lus10023097.BGIv1.0 annot-version=v1.0 MEKSQTKVCVTGGTGYIGSCLVKKLLENGYTVHATLRNLDDKAKVGLLTSLPNAETNLLLFKANIYNLEESSQQSTAATSFSTRRTHSSTTPTAPRLDKV EAMAEGSKRITESCVKSGTVKRLIYTGSVTAASPLFDDGVGYGATVDESCWTPLRLSFHQSDPFTLIDHMMVHRED

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G09510			NAD(P)-binding Rossmann-fold s...		Lus10023097 [exp]	0	1
AT3G20580		COBL10	COBRA-like protein 10 precurso...		Lus10043065 [exp]	2.6	0.8891
AT5G20630		ATGER3, GLP3A, ...	GERMIN-LIKE PROTEIN 3, ARABIDO...		Lus10015645 [exp]	5.7	0.7641
					Lus10032915 [exp]	7.3	0.7637
AT1G22380		ATUGT85A3	UDP-glucosyl transferase 85A3 ...		Lus10013919 [exp]	9.4	0.7499
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Lus10013920 [exp]	10.2	0.7443
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10040382 [exp]	10.9	0.6428
AT2G16730		BGAL13	beta-galactosidase 13, glycosy...		Lus10014126 [exp]	11.2	0.7443
AT5G45670			GDSL-like Lipase/Acylhydrolase...		Lus10015241 [exp]	12.1	0.7443
AT5G20260			Exostosin family protein (.1)		Lus10039980 [exp]	13.0	0.7443
AT1G08580			unknown protein		Lus10000388 [exp]	13.4	0.7098

Compare expression of checked genes

Lus10023097 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.