Plant FIBer expression Database

Lus10023098 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G64355 150 / 3e-46 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10032371
[exp]
308 / 3e-108 AT1G64355 152 / 5e-47 unknown protein
Lus10003895
[exp]
180 / 5e-58 AT1G64355 179 / 8e-58 unknown protein
Lus10001903
[exp]
164 / 2e-52 AT1G64355 184 / 2e-60 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G138500
[exp]
174 / 2e-55 AT1G64355 224 / 3e-75 unknown protein
Potri.001G093001
[exp]
100 / 4e-28 AT1G64355 123 / 3e-37 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF12159 DUF3593 Protein of unknown function (DUF3593)
Representative CDS sequence
>Lus10023098 pacid=23170380 polypeptide=Lus10023098 locus=Lus10023098.g ID=Lus10023098.BGIv1.0 annot-version=v1.0
ATGATGAACACCGGATGCCGGCGACCGGAGTTCATTCCACCCACTCTTCCACTCCCAGTTTCCTTGGCGGGTTATAAATTTCTCCTCCCAATTGTTCGCA
AAGATCCCTGTAGAACAGGCTTACAGTCCAGACACGTGGGAGCAGTTAAAACTGCGGGCACCGGAGGAAGAAGAAGGATTGTTTTCTGCAGAGGATTGTT
TCCTCCGGTGGTGGCGATGCCGAATATTGATTCCCAGAGCATTGCCTGTCAGCTCTTTGCGCTTTCTTTGCTACCTTACATTTGTTTCTTGTACTTCATC
ACCAAGTCAAAGACTGCTCCACCCCTCACCCTCTTCGGATTCTACTTCTTGCTCGTCTTCGTCGCCGCTACAAAAAAATTGCAGTATGGAACTTCCTTAT
CGAATGTGGATTGGTTGCATGGTGGAGTTGAGTCACTTCTCACTCTAACCAACTTGTTCATTGTATTGGGATTGAGACAAGGTCTTAGGAAAGTGATGAA
TGATATGGAGGCTGAGACTGAACCTAGTCCTAGTTCATCAATCAAAGAGGAAGAGGGGGCCTTTCACTAG
AA sequence
>Lus10023098 pacid=23170380 polypeptide=Lus10023098 locus=Lus10023098.g ID=Lus10023098.BGIv1.0 annot-version=v1.0
MMNTGCRRPEFIPPTLPLPVSLAGYKFLLPIVRKDPCRTGLQSRHVGAVKTAGTGGRRRIVFCRGLFPPVVAMPNIDSQSIACQLFALSLLPYICFLYFI
TKSKTAPPLTLFGFYFLLVFVAATKKLQYGTSLSNVDWLHGGVESLLTLTNLFIVLGLRQGLRKVMNDMEAETEPSPSSSIKEEEGAFH

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G64355 unknown protein Lus10023098
[exp]
0 1
AT1G67080 ABA4 abscisic acid (aba)-deficient ... Lus10028476
[exp]
5.9 0.8146
AT5G17620 unknown protein Lus10001340
[exp]
7.2 0.8191
AT4G13590 Uncharacterized protein family... Lus10011763
[exp]
8.1 0.8179
AT3G61220 SDR1 short-chain dehydrogenase/redu... Lus10014690
[exp]
10.1 0.8410
AT5G21060 Glyceraldehyde-3-phosphate deh... Lus10034077
[exp]
12.0 0.7672
AT3G09860 unknown protein Lus10023014
[exp]
13.0 0.8400
AT1G78915 Tetratricopeptide repeat (TPR)... Lus10034802
[exp]
16.9 0.7985
AT1G27510 Protein of unknown function (D... Lus10002370
[exp]
21.4 0.8040
AT4G21190 EMB1417 embryo defective 1417, Pentatr... Lus10027535
[exp]
22.3 0.8079
AT2G38140 PSRP4 plastid-specific ribosomal pro... Lus10004829
[exp]
22.5 0.8348

Lus10023098 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.