Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G11070 216 / 8e-68 WRKY ATWRKY41, WRKY41 WRKY family transcription factor (.1.2) AT4G23810 198 / 1e-60 WRKY ATWRKY53, WRKY53 WRKY family transcription factor (.1) AT5G24110 154 / 7e-44 WRKY ATWRKY30, WRKY30 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 30, WRKY DNA-binding protein 30 (.1) AT2G46400 136 / 2e-37 WRKY ATWRKY46, WRKY46 WRKY DNA-binding protein 46 (.1) AT2G40740 97 / 7e-23 WRKY ATWRKY55, WRKY55 WRKY DNA-binding protein 55 (.1.2) AT3G56400 96 / 3e-22 WRKY ATWRKY70, WRKY70 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY DNA-binding protein 70 (.1) AT2G40750 91 / 4e-20 WRKY ATWRKY54, WRKY54 WRKY DNA-binding protein 54 (.1) AT1G66600 83 / 5e-18 WRKY ABO3, ATWRKY63, WRKY63 WRKY DNA-binding protein 63, ABA overly sensitive mutant 3 (.1) AT5G01900 80 / 6e-17 WRKY ATWRKY62, WRKY62 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 62, WRKY DNA-binding protein 62 (.1) AT1G66550 79 / 7e-17 WRKY ATWRKY67, WRKY67 WRKY DNA-binding protein 67 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032372 [exp] 639 / 0 AT4G11070 234 / 4e-75 WRKY family transcription factor (.1.2) Lus10001902 [exp] 327 / 6e-111 AT4G11070 210 / 6e-66 WRKY family transcription factor (.1.2) Lus10003894 [exp] 304 / 5e-102 AT4G11070 196 / 1e-60 WRKY family transcription factor (.1.2) Lus10001062 [exp] 177 / 2e-52 AT4G11070 169 / 5e-50 WRKY family transcription factor (.1.2) Lus10039331 [exp] 174 / 4e-51 AT4G11070 174 / 1e-51 WRKY family transcription factor (.1.2) Lus10029022 [exp] 103 / 3e-25 AT2G40740 157 / 8e-47 WRKY DNA-binding protein 55 (.1.2) Lus10014177 [exp] 87 / 3e-19 AT3G56400 105 / 3e-26 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY DNA-binding protein 70 (.1) Lus10012870 [exp] 84 / 7e-18 AT3G56400 153 / 1e-44 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY DNA-binding protein 70 (.1) Lus10025216 [exp] 84 / 9e-18 AT3G56400 123 / 8e-33 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY DNA-binding protein 70 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G138600 [exp] 369 / 3e-127 AT4G11070 234 / 5e-75 WRKY family transcription factor (.1.2) Potri.001G092900 [exp] 364 / 2e-125 AT4G11070 238 / 8e-77 WRKY family transcription factor (.1.2) Potri.012G031700 [exp] 270 / 6e-88 AT5G24110 196 / 4e-60 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 30, WRKY DNA-binding protein 30 (.1) Potri.014G096200 [exp] 242 / 2e-77 AT4G23810 170 / 7e-50 WRKY family transcription factor (.1) Potri.002G168700 [exp] 226 / 3e-71 AT2G46400 170 / 3e-50 WRKY DNA-binding protein 46 (.1) Potri.006G109100 [exp] 103 / 7e-25 AT3G56400 129 / 4e-35 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY DNA-binding protein 70 (.1) Potri.013G090400 [exp] 102 / 3e-24 AT2G40740 166 / 8e-49 WRKY DNA-binding protein 55 (.1.2) Potri.019G059300 [exp] 98 / 1e-22 AT2G40740 168 / 2e-49 WRKY DNA-binding protein 55 (.1.2) Potri.016G137900 [exp] 96 / 2e-22 AT3G56400 127 / 2e-34 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY DNA-binding protein 70 (.1) Potri.013G090300 [exp] 91 / 2e-20 AT3G56400 172 / 1e-51 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY DNA-binding protein 70 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0274 [flax] [poplar] WRKY-GCM1 PF03106 [flax] [poplar] WRKY WRKY DNA -binding domain
Representative CDS sequence Show only first row Show all	>Lus10023099 pacid=23170366 polypeptide=Lus10023099 locus=Lus10023099.g ID=Lus10023099.BGIv1.0 annot-version=v1.0 ATGGAGAGATCAGAATTGAGCTGGGAGCAGAGGACAGTGGTGAATGAGCTAATCCAAGGGATGGAAGTTGCGAAACAGCTGAGCTGTCATCTCAAGGGGG CATCTGCTGTTGAAGTTGCAGACAGTCTAGTTCAGAGGATATTGTCTTCTTATGAGAAGGCTCTATTTATTCTCAACTGGAAGAATAATGGGTCATCATC ATCATCATCATCAATGGAGCAAACTCTGCAAGCTGTTGTTACTGGCACAACGGCAGCAGCAGTAGTAGCAGCTACTGGTTCTGCTGGAGTTCCTGGATCT CCATTGTCCAGGAATGGGAGTCCTAGGAGTGAGGATTTTGATGGAAGCAAGGATAGTTATCAAGTACCAATTGATGCCTCTAAGAAAAGAAAGGCAATGC CTAGATGGACTGATCAAGTTAGAATGAGCTCTGATAATGGATTGGAAGGTCCTATTGATGATGGCTTTAGCTGGAGGAAGTATGGTCAGAAAGACATACT TGGAGCCAAATATCCTAGAAGCTATTACAGGTGCACATACAGAAGCACTCAAAACTGCTGGGCAATAAAGCAAGTCCAGAGGTCAGATGAAGATCCGACA ATCTTTGAGGTGACATACAGAGGAACACACACTTGTTCCTATGGCCAGCAAACAGTTCCATCACCACAGAAAGAAGAACAACAACATAAGCATAATATCA GCCGCCATCAAATTCCACTACCACCTCCACCACCTGAAGAAGCTCTGCAAAACTTGCAGAAGGGGTTGAAAGTTGATACTCAGGATTTGGACAATAGAGA GGCGATTCCTTTCACGTTCCCTTCCACGTACGAATGCCAAAACAGCAATTACTCCCCCTCGTTTCTGTCCCCGGCAACGCCAGAACCGAACTACTATCAT CAACTTTCTCCATTGGTGAACAGCTTTGGAGGAGGGGCTCAAAGTTTGCAGCTTTCTGATTCAGAGCTGGCTGAAATAATTTCAGCTCAGACTTCGGCCA CGAGCTCTCCGATTCTGGACCTGGATTTCCCACTCGAATCGTTCGACCTGGTCCCAAACTTCTCGTATCCGCCAGGCTTTTTCACTTGA
AA sequence Show only first row Show all	>Lus10023099 pacid=23170366 polypeptide=Lus10023099 locus=Lus10023099.g ID=Lus10023099.BGIv1.0 annot-version=v1.0 MERSELSWEQRTVVNELIQGMEVAKQLSCHLKGASAVEVADSLVQRILSSYEKALFILNWKNNGSSSSSSSMEQTLQAVVTGTTAAAVVAATGSAGVPGS PLSRNGSPRSEDFDGSKDSYQVPIDASKKRKAMPRWTDQVRMSSDNGLEGPIDDGFSWRKYGQKDILGAKYPRSYYRCTYRSTQNCWAIKQVQRSDEDPT IFEVTYRGTHTCSYGQQTVPSPQKEEQQHKHNISRHQIPLPPPPPEEALQNLQKGLKVDTQDLDNREAIPFTFPSTYECQNSNYSPSFLSPATPEPNYYH QLSPLVNSFGGGAQSLQLSDSELAEIISAQTSATSSPILDLDFPLESFDLVPNFSYPPGFFT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G11070	WRKY	ATWRKY41, WRKY4...	WRKY family transcription fact...		Lus10023099 [exp]	0	1
AT4G11070	WRKY	ATWRKY41, WRKY4...	WRKY family transcription fact...		Lus10032372 [exp]	1.0	0.9928
AT1G06450			Polynucleotidyl transferase, r...		Lus10035078 [exp]	2.4	0.9711
AT4G29780			unknown protein		Lus10011946 [exp]	3.0	0.9668
AT5G47390	MYB		myb-like transcription factor ...		Lus10004384 [exp]	3.7	0.9463
AT2G23810		TET8	tetraspanin8 (.1)		Lus10015494 [exp]	5.9	0.9479
AT2G40140	C3HZnF	ATSZF2, CZF1, Z...	\(SALT-INDUCIBLE ZINC FINGER 2...		Lus10028970 [exp]	6.5	0.9473
AT1G06450			Polynucleotidyl transferase, r...		Lus10000327 [exp]	6.7	0.9443
AT1G19210	AP2_ERF		Integrase-type DNA-binding sup...		Lus10034885 [exp]	6.9	0.9455
AT5G48150	GRAS	PAT1	phytochrome a signal transduct...		Lus10035840 [exp]	6.9	0.9514
AT1G19210	AP2_ERF		Integrase-type DNA-binding sup...		Lus10033420 [exp]	8.1	0.9387

Compare expression of checked genes

Lus10023099 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.