Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G41850 171 / 7e-52 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032373 [exp] 310 / 5e-106 AT5G41850 163 / 6e-50 alpha/beta-Hydrolases superfamily protein (.1) Lus10003892 [exp] 196 / 6e-61 AT5G41850 297 / 2e-102 alpha/beta-Hydrolases superfamily protein (.1) Lus10021037 [exp] 191 / 1e-58 AT5G41850 305 / 1e-104 alpha/beta-Hydrolases superfamily protein (.1) Lus10003902 [exp] 136 / 1e-38 AT5G41850 231 / 3e-77 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G092800 [exp] 205 / 5e-65 AT5G41850 314 / 1e-109 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10023100 pacid=23170441 polypeptide=Lus10023100 locus=Lus10023100.g ID=Lus10023100.BGIv1.0 annot-version=v1.0 ATGTCTGTGGAAACTCAACCAGTATACTTGCTTCGCCCCGAGTCAATACCCTGGCCATCCTCTGGTCTTGGCTGGGAGATCTTTTGGTGCAAGGTAGGAG AGGTGGATGTTGAAGCTTCAGCTGTTATATGCTTTGGTTACCTTGTTGAGGGTATGACTGGAGCAGCTCAGGATGAAACACTGTCACGGCTTGAAGTTCC AGTTATATTTATTCAGGGTAGCAGAGACGTGTTTTGCCCACTTGAAAAGCTAGAAGTACTTCGCAAGAAGATGAAATGCTATAACGAGTTGCATGTAGTT GATGGAGGCAACCATTCTTTCAGTGTAGGAGAGAAGCATCTCCTGGAAAATGGTATAGCCCTCAATGTATTTAAGCTAACAAGCTTTGTACTCACATTGT CGTCACTCGTTGTGGCGGGTGCATTTCGTTGCACCCAAATCAATCCAATTCAAGTTGCTACCAGTGTTTTTCCCGTGAAAAACCAGAACAAGGATGCAAA GGATGGATCATTGTCTCCTGTGGTTGTGCTAGCCCCTGGTTCCACCACTCCAGTATTTTCTGATTGGATGATTAGGTGGAAGGCGATGTTAAAGAATGCT TTGGATGCTGTTGAAGTCATCACCTTTGACTATCTTTATATGTCTGGTGAAAAGAAAAGGGCACCTCCAAAAGCAGGGAAGCTTGTCAAGTTTCACAAAA ACATTGTGAAACAACCCATTGAGAAGTGCCCTGGACATCCGTTGATTCTGGCTGGGAAAGCTGTAGGAGCAAGGGTGAGCTGCATGGTTGCCTCCGAGGT GGATGTTACCGCGTCCGCAGTAATATGCTTGGGCTACCCGCTTAAGAGCATAATCAGAGCTAGAAACGACGAAACGCTGCTGGAACTTAGAGTCCCGGCA ATGTTTGTACAGGAACATAGGATGAAAGAAGACTCGAGCCAACACGAATCCGACCTGGAAGCTGTTGAGGCTGTTGCTTCCTTCGTTTCCAGCTGTCTCG GAGGAACTTAG
AA sequence Show only first row Show all	>Lus10023100 pacid=23170441 polypeptide=Lus10023100 locus=Lus10023100.g ID=Lus10023100.BGIv1.0 annot-version=v1.0 MSVETQPVYLLRPESIPWPSSGLGWEIFWCKVGEVDVEASAVICFGYLVEGMTGAAQDETLSRLEVPVIFIQGSRDVFCPLEKLEVLRKKMKCYNELHVV DGGNHSFSVGEKHLLENGIALNVFKLTSFVLTLSSLVVAGAFRCTQINPIQVATSVFPVKNQNKDAKDGSLSPVVVLAPGSTTPVFSDWMIRWKAMLKNA LDAVEVITFDYLYMSGEKKRAPPKAGKLVKFHKNIVKQPIEKCPGHPLILAGKAVGARVSCMVASEVDVTASAVICLGYPLKSIIRARNDETLLELRVPA MFVQEHRMKEDSSQHESDLEAVEAVASFVSSCLGGT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G41850			alpha/beta-Hydrolases superfam...		Lus10023100 [exp]	0	1
AT2G23640		RTNLB13	Reticulan like protein B13 (.1...		Lus10039905 [exp]	2.4	0.9368
AT5G23940		PEL3, DCR, EMB3...	PERMEABLE LEAVES3, EMBRYO DEFE...		Lus10027500 [exp]	6.8	0.8970
					Lus10038642 [exp]	7.7	0.9533
					Lus10008409 [exp]	7.9	0.9363
AT3G16360		AHP4	HPT phosphotransmitter 4 (.1.2...		Lus10025821 [exp]	8.5	0.9298
AT3G46290		HERK1	hercules receptor kinase 1 (.1...		Lus10012647 [exp]	10.6	0.9488
AT1G65480		FT	FLOWERING LOCUS T, PEBP (phosp...		Lus10004452 [exp]	11.0	0.9287
AT5G36930			Disease resistance protein (TI...		Lus10030498 [exp]	13.3	0.9479
AT5G39160			RmlC-like cupins superfamily p...		Lus10034254 [exp]	14.1	0.9186
					Lus10016111 [exp]	14.5	0.9037

Compare expression of checked genes

Lus10023100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.