Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23820 616 / 0 Pectin lyase-like superfamily protein (.1) AT5G41870 569 / 0 Pectin lyase-like superfamily protein (.1) AT3G62110 418 / 2e-143 Pectin lyase-like superfamily protein (.1) AT4G33440 416 / 2e-142 Pectin lyase-like superfamily protein (.1) AT3G48950 377 / 2e-127 Pectin lyase-like superfamily protein (.1) AT3G61490 376 / 9e-127 Pectin lyase-like superfamily protein (.1.2.3) AT3G16850 372 / 1e-125 Pectin lyase-like superfamily protein (.1) AT2G23900 370 / 2e-124 Pectin lyase-like superfamily protein (.1) AT4G23500 364 / 6e-122 Pectin lyase-like superfamily protein (.1) AT5G49215 361 / 3e-121 Pectin lyase-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032374 [exp] 827 / 0 AT4G23820 656 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10003890 [exp] 695 / 0 AT4G23820 657 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10003589 [exp] 422 / 7e-145 AT4G33440 649 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10014799 [exp] 421 / 4e-144 AT4G33440 630 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10038030 [exp] 414 / 1e-141 AT3G62110 632 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10007922 [exp] 381 / 1e-128 AT3G61490 743 / 0.0 Pectin lyase-like superfamily protein (.1.2.3) Lus10017517 [exp] 377 / 5e-127 AT4G23500 675 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10037714 [exp] 375 / 8e-127 AT3G16850 558 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10016837 [exp] 375 / 1e-126 AT3G16850 557 / 0.0 Pectin lyase-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G139100 [exp] 699 / 0 AT4G23820 660 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.014G112100 [exp] 427 / 6e-147 AT3G62110 649 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.005G063400 [exp] 425 / 6e-146 AT4G33440 652 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.002G186900 [exp] 423 / 2e-145 AT3G62110 666 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.007G105800 [exp] 422 / 1e-144 AT4G33440 642 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.008G211500 [exp] 401 / 4e-137 AT3G16850 509 / 2e-179 Pectin lyase-like superfamily protein (.1) Potri.010G005500 [exp] 394 / 4e-134 AT3G16850 497 / 1e-174 Pectin lyase-like superfamily protein (.1) Potri.017G145900 [exp] 393 / 9e-134 AT3G48950 659 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.001G100000 [exp] 383 / 1e-129 AT4G23500 701 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.003G131700 [exp] 379 / 6e-128 AT3G61490 688 / 0.0 Pectin lyase-like superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF00295 [flax] [poplar] Glyco_hydro_28 Glycosyl hydrolases family 28
Representative CDS sequence Show only first row Show all	>Lus10023101 pacid=23170359 polypeptide=Lus10023101 locus=Lus10023101.g ID=Lus10023101.BGIv1.0 annot-version=v1.0 ATGCAATGCTTCCTGCTACTCGCTCTCTTCAGCTGCTGCTGCGCCGGCGTCTTCCGGACCGGCTCTGCGGCTGAAGTAGTGACCTGCTCCGGGATAGTTC CGATGAGGCACAGGAACGATAAGATTTCGATCACGGACTACGGCGGCGTCGGGGACGGGAAGACGCTCAATACCAAGGCGTTTAAGGAAGCCATTTACCG GATTGAGCATCTGAAGAGGCGAGGCGGCACTCTGCTTTACATACCGCCTGGGGAGTACTTGACGGAGAGCTTCAAACTCACCAGCCACATGACTCTCTAC TTGGCCAGAGGCGCCATCATCAAAGCCACCCAGGAAACCACGAACTGGCCTTTGATTGCCCCTCTGCCATCCTATGGAAGGGGGAGAGAGCGCCCTGGTG GAAGGTATGTGAGCTTCATTCAAGCCGATGGAGTACGTGACGTGATCATAACAGGTGAGAATGGCACGATTGATGGGCAAGGAGATGTTTGGTGGAATAT GTGGAGGCAGCGAACTCTTGAATACACTAGACCTCACCTAATCGAGTTCATAAACTCAACGGACATTATCATTTCCAATGTGATCTTCAAGGACTCTCCC TTTTGGAACATTCATCCCGTTTATAGCAGCAACTTCGTGATCAGATACGTTACCATTTTGGCTCCTAGAGACTCTCCTAATACAGATGGAGTCGATCCAG ACTCAAGCTCCAACGTATGCATTGAGGATTCCTACATCTCAACCGGGGACGATCTAGTAGCAGTGAAGAGCGGCTGGGACGAGTACGGAATCGCTTACTC CCGTCCCAGCTCAGGCATCACCATCCGCCGCATCACTGGATCATCCCCATTCGCCGGAATTGCAGTGGGAAGCGAAACCTCAGGAGGCGTAGAGAACGTT CTAGCAGAAAACATAAATCTCTACAACATGGGAGTCGGCCTACATGTGAAAACAAACCAAGGCAGAGGTGGCTTCATAAAGAACATCACGTTCGCCCACG TCTACATGGAAGAAGTCCGAACAGGGATCAAGATCGCCGGCGACGTCGGTGACCACCCTGACGACGGTTTTGATCCAAACGCTCTTCCGGTTGTAAAGGG CCTGACTTTCCACAGCATATGGGGCGAAAAGGTTCTGCAGCCAGGATTGATCCGTGGGTTGAAGGACTCTCCGTTCACCAATGTTTGCCTCTCCAATATC AACCTTCATAGCGTACCTCCGCCGGCGACGAGGACGCCTACGCAACCGTGGAAATGCACTGATGTTAAAGGAGCTTCCGTTCAGGTCATCCCTTCTCCTT GCTCTGAACTCGCTTCCACTATCCCCTCTGGCTCTTGCTCCGATCACTTTTAA
AA sequence Show only first row Show all	>Lus10023101 pacid=23170359 polypeptide=Lus10023101 locus=Lus10023101.g ID=Lus10023101.BGIv1.0 annot-version=v1.0 MQCFLLLALFSCCCAGVFRTGSAAEVVTCSGIVPMRHRNDKISITDYGGVGDGKTLNTKAFKEAIYRIEHLKRRGGTLLYIPPGEYLTESFKLTSHMTLY LARGAIIKATQETTNWPLIAPLPSYGRGRERPGGRYVSFIQADGVRDVIITGENGTIDGQGDVWWNMWRQRTLEYTRPHLIEFINSTDIIISNVIFKDSP FWNIHPVYSSNFVIRYVTILAPRDSPNTDGVDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYSRPSSGITIRRITGSSPFAGIAVGSETSGGVENV LAENINLYNMGVGLHVKTNQGRGGFIKNITFAHVYMEEVRTGIKIAGDVGDHPDDGFDPNALPVVKGLTFHSIWGEKVLQPGLIRGLKDSPFTNVCLSNI NLHSVPPPATRTPTQPWKCTDVKGASVQVIPSPCSELASTIPSGSCSDHF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G23820			Pectin lyase-like superfamily ...		Lus10023101 [exp]	0	1
AT3G14310		ATPME3	pectin methylesterase 3 (.1)		Lus10013344 [exp]	1.7	0.8259
AT4G23900			Nucleoside diphosphate kinase ...		Lus10003878 [exp]	4.9	0.8243
AT1G74520		ATHVA22A	HVA22 homologue A (.1)		Lus10024234 [exp]	5.8	0.8461
AT3G57400			unknown protein		Lus10042067 [exp]	6.3	0.8204
AT3G62660		GATL7	galacturonosyltransferase-like...		Lus10010025 [exp]	9.5	0.8210
AT1G56000			FAD/NAD(P)-binding oxidoreduct...		Lus10039206 [exp]	12.1	0.7909
AT5G08580			Calcium-binding EF hand family...		Lus10010165 [exp]	13.1	0.7696
AT4G23820			Pectin lyase-like superfamily ...		Lus10032374 [exp]	13.7	0.7974
AT1G17880		ATBTF3	basic transcription factor 3 (...		Lus10039661 [exp]	14.1	0.8105
AT5G61250		ATGUS1	glucuronidase 1 (.1.2)		Lus10037109 [exp]	15.0	0.7847

Compare expression of checked genes

Lus10023101 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.