Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16630 1106 / 0 ATKINESIN-13A, KINESIN-13A P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G16060 573 / 0 ATP binding microtubule motor family protein (.1) AT3G49650 199 / 2e-53 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G18550 190 / 8e-51 ATP binding microtubule motor family protein (.1) AT4G15885 168 / 8e-49 kinesin motor protein-related (.1) AT5G47820 178 / 5e-46 FRA1 FRAGILE FIBER 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT5G60930 173 / 3e-44 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G27550 167 / 5e-43 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G28620 168 / 1e-42 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G45850 166 / 4e-42 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002876 [exp] 1591 / 0 AT3G16630 1127 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10037546 [exp] 587 / 0 AT3G16060 994 / 0.0 ATP binding microtubule motor family protein (.1) Lus10011449 [exp] 567 / 0 AT3G16060 983 / 0.0 ATP binding microtubule motor family protein (.1) Lus10019245 [exp] 218 / 8e-61 AT3G49650 816 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10011579 [exp] 219 / 3e-60 AT3G49650 950 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10000392 [exp] 190 / 9e-50 AT5G60930 1483 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10000762 [exp] 189 / 2e-49 AT5G60930 1498 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10010047 [exp] 180 / 2e-46 AT5G47820 1569 / 0.0 FRAGILE FIBER 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10009073 [exp] 170 / 2e-43 AT3G45850 1019 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G013500 [exp] 1241 / 0 AT3G16630 1141 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.008G221400 [exp] 1240 / 0 AT3G16630 1167 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.018G079800 [exp] 645 / 0 AT3G16060 755 / 0.0 ATP binding microtubule motor family protein (.1) Potri.008G223000 [exp] 612 / 0 AT3G16630 574 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.003G053800 [exp] 610 / 0 AT3G16060 1010 / 0.0 ATP binding microtubule motor family protein (.1) Potri.001G182300 [exp] 602 / 0 AT3G16060 990 / 0.0 ATP binding microtubule motor family protein (.1) Potri.012G058400 [exp] 187 / 2e-49 AT1G18550 872 / 0.0 ATP binding microtubule motor family protein (.1) Potri.005G150800 [exp] 182 / 4e-47 AT5G60930 1386 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.002G106000 [exp] 179 / 3e-46 AT5G60930 1524 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.014G024700 [exp] 178 / 6e-46 AT5G47820 1580 / 0.0 FRAGILE FIBER 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00225 [flax] [poplar] Kinesin Kinesin motor domain
Representative CDS sequence Show only first row Show all	>Lus10023103 pacid=23170440 polypeptide=Lus10023103 locus=Lus10023103.g ID=Lus10023103.BGIv1.0 annot-version=v1.0 ATGGGTGGGCATATGCAGCAGACTAATGCTGCTGCTGCGGCGGCGTTCTACGATCACCCCGGAGCTCTGCAGAATGCATCCGCCACGAACGATGCCGGCG ATGCAGTGATGGCGCGGTGGCTACAGTCTGCCGGCCTGCAGCATTTGGCCTCTCCCCTGGCGTCCACCGATCAGCGCGCGCTTCCTAATCTTCTAATGCA GGGTTACGGGGCGCAATCTGCTGAAGAGAAGCAGAGGCTTTTCAAGCTAATGAGAAATCTTAATTTCAATGGCGAATCTGGATCTGAACCTTACACACCA ACTGCACAAACATCAACCACTGCAGCAGCATCAGATGGCTTTTATTCCCCCGACTTCAGGGGGGATTTTGGAGCTGGCCTATTGGACCTTCATGCCATGG ATGATACAGAGCTTTTGTCTGAGCATGTTATGTCAGAACCATTTGACACATCACCCGTCATGCCTGATATTAGTAGAGGATTTGAGAATGAACTCTACAT GGCTGGTGGACGACACCAAACTGGGCAAATTGATGCAGAACCATCAGTTCCTCTCCCTGTGAATGAGAAAGATACCATTGGAAGGGAAAGTAACGTGGCT AAGATCAAAGTTGTGGTGCGTAAGAGACCACTGAACAAGAAGGAGCTTGCAAAGAAAGAAGATGATGTTGTGTATGTCACAGACAATTCCCTGACCGTCC ATGAACCCAAACTAAAGGTGGACTTGACAGCATATGTTGAGAAGCATGAGTTCTGTTTTGATGCCGTTCTTGATGAAGATGTAAACAATGATAAGGTGTA CAGAGACACTGTGGAGCCAATCATTCCAACTATATTTCAGAAGACAAAAGCTACATGTTTTGCATATGGCCAGACAGGTAGTGGAAAGACTTATACAATG CAACCTTTGCCTCTCAGAGCAGCTCAAGATATGGTTAGATTATTGCACCAGCCAGTTTACCGTTCCCAGAAATTCAAATTGTGGCTCAGTTACTTTGAAA TATATGGAGGGAAACTCTTCGATCTTCTGTCTGAAAGAAAGAAGCTGTGTATGAGAGAAGATGGCAGACAGCAGGTTTGCATTGTTGGTCTACAAGAATT TGAGGTTTTGGATGTACAAATCGTTAAGGAGTACATTGAGAAGGGAAATGCTGCAAGAAGTACTGGATCAACAGGCGCCAATGAGGAATCTTCAAGGTCA CATGCTATATTACAACTTGTTATTAAGAAGCATAAAGAAGTAAAAGAGACAAGGAGGAACAATAACATTGATGTGAATGAGGCTAAAAATGGAAAGTTGG TTGGGAAAATTTCCTTCATTGATCTTGCTGGAAGTGAGCGAGGAGCAGATACCACTGACAATGACAGACAGACAAGGATTGAAGGTGCAGAGATCAACAA GAGTCTTCTGGCTCTTAAGGAGTGCATCCGTGCGCTCGACAATGAGCAGCTCCATATACCATTCCGTGGGAGCAAGCTAACAGAAGTACTTCGCGATTCC TTTGTTGGCAACTCGAGGACTGTAATGATCTCTTGTATTTCTCCAAATGCGGGCTCATGTGAACACACATTGAATACGCTAAGATATGCTGATAGGGTCA AAAGTCTTTCCAAGGGTAGCAACTCAAAAAAGGATCAGCCTGTAATTTCATCAACTAATAAGGATGTGCCTCCAGCATCGTCTTTGGAAGTTTCCTCTGA CATCGATGAAATATTTGAACAACGAGAAGTGGCAAGAGCGGTTGATATGGCCAGAAGGTTTGCAGAGAAAGAAAGTGCGTCTTACAATCCCAGTACTGAT TATGACAGACAGCCATCAAATATTCCTTCAATTTATAACTTCAATGGGCGATCAGAAAGTGGGCCGGCTTCCAGCTTAACTGACCGGGAGAGAATTGATG TCAATAATGGACCAGCAAATGCTAAAAAGAACTCATCATACTCCCAAACCCCGGTTGAGGTGGAAGAAAAAGTGCAGAAGGTATCACCACCTCGTCGAAA AGCACCGAGGGAGGAAAAAACCGAGAAGTCGGGGAGCTGGGCAAAGAAAGATGGCAGCACGGCTGATGCATCCACCACAAATTCTTCTAGGATACCGGGT ATTGGAAATCTCTCTTCAAATACCGTTGGAACAAGGCAAGAACCTGATTCAACTTCAGACGGAAGTATCAATGCTATACTTAAGGAAGAAGAAGCTCTAA TTACAGCACATAGAAAAGAGATAGAGGATACGATGGAGATTGTTCGTGAGGAAATGAAGCTGTTGGCAGAAGTTGACCGACCAGGGAGCCAGATAGACAA CTATGTAACTCAGCTGAGTTTTGTACTGTCGCGTAAGGCTGCAGGGTTGGTTAGCCTCCAAGCTCGCCTTGCTAGGTTCCAGCATCGGCTTAAGGAACAG GAGATCCTTAGTCGTAAACGAGTCCCTCGCTAG
AA sequence Show only first row Show all	>Lus10023103 pacid=23170440 polypeptide=Lus10023103 locus=Lus10023103.g ID=Lus10023103.BGIv1.0 annot-version=v1.0 MGGHMQQTNAAAAAAFYDHPGALQNASATNDAGDAVMARWLQSAGLQHLASPLASTDQRALPNLLMQGYGAQSAEEKQRLFKLMRNLNFNGESGSEPYTP TAQTSTTAAASDGFYSPDFRGDFGAGLLDLHAMDDTELLSEHVMSEPFDTSPVMPDISRGFENELYMAGGRHQTGQIDAEPSVPLPVNEKDTIGRESNVA KIKVVVRKRPLNKKELAKKEDDVVYVTDNSLTVHEPKLKVDLTAYVEKHEFCFDAVLDEDVNNDKVYRDTVEPIIPTIFQKTKATCFAYGQTGSGKTYTM QPLPLRAAQDMVRLLHQPVYRSQKFKLWLSYFEIYGGKLFDLLSERKKLCMREDGRQQVCIVGLQEFEVLDVQIVKEYIEKGNAARSTGSTGANEESSRS HAILQLVIKKHKEVKETRRNNNIDVNEAKNGKLVGKISFIDLAGSERGADTTDNDRQTRIEGAEINKSLLALKECIRALDNEQLHIPFRGSKLTEVLRDS FVGNSRTVMISCISPNAGSCEHTLNTLRYADRVKSLSKGSNSKKDQPVISSTNKDVPPASSLEVSSDIDEIFEQREVARAVDMARRFAEKESASYNPSTD YDRQPSNIPSIYNFNGRSESGPASSLTDRERIDVNNGPANAKKNSSYSQTPVEVEEKVQKVSPPRRKAPREEKTEKSGSWAKKDGSTADASTTNSSRIPG IGNLSSNTVGTRQEPDSTSDGSINAILKEEEALITAHRKEIEDTMEIVREEMKLLAEVDRPGSQIDNYVTQLSFVLSRKAAGLVSLQARLARFQHRLKEQ EILSRKRVPR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G16630		ATKINESIN-13A, ...	P-loop containing nucleoside t...		Lus10023103 [exp]	0	1
AT1G50120			unknown protein		Lus10040977 [exp]	1.4	0.9324
AT3G05420		ACBP4	acyl-CoA binding protein 4 (.1...		Lus10015176 [exp]	2.0	0.9198
AT3G08550		ABI8, ELD1, KOB...	KOBITO, ABA INSENSITIVE 8, elo...		Lus10024182 [exp]	4.2	0.9013
AT4G37270		ATHMA1, HMA1	ARABIDOPSIS THALIANA HEAVY MET...		Lus10019313 [exp]	4.8	0.8713
AT3G05420		ACBP4	acyl-CoA binding protein 4 (.1...		Lus10031497 [exp]	5.5	0.9173
AT2G21520			Sec14p-like phosphatidylinosit...		Lus10023546 [exp]	5.7	0.8864
AT3G08550		ABI8, ELD1, KOB...	KOBITO, ABA INSENSITIVE 8, elo...		Lus10024181 [exp]	6.0	0.8994
AT4G30020			PA-domain containing subtilase...		Lus10006973 [exp]	6.6	0.8744
AT1G13860		QUL1	QUASIMODO2 LIKE 1 (.1.2.3.4)		Lus10037101 [exp]	6.7	0.9134
AT1G52360			Coatomer, beta' subunit (.1.2)		Lus10011467 [exp]	8.0	0.9173

Compare expression of checked genes

Lus10023103 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.