Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G15880 354 / 4e-117 ATESD4, ESD4 EARLY IN SHORT DAYS 4, Cysteine proteinases superfamily protein (.1) AT3G06910 298 / 2e-95 ULP1A, ELS1, AtULP1a ESD4-LIKE SUMO PROTEASE 1, UB-like protease 1A (.1) AT4G00690 256 / 8e-81 ULP1B UB-like protease 1B (.1) AT1G10570 82 / 2e-16 ULP1C, OTS2 UB-LIKE PROTEASE 1C, OVERLY TOLERANT TO SALT 2, Cysteine proteinases superfamily protein (.1.2) AT1G60220 72 / 4e-13 ULP1D, OTS1 OVERLY TOLERANT TO SALT 1, UB-like protease 1D (.1) AT4G33620 47 / 4e-05 Cysteine proteinases superfamily protein (.1) AT1G09730 46 / 5e-05 Cysteine proteinases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002875 [exp] 866 / 0 AT4G15880 404 / 2e-136 EARLY IN SHORT DAYS 4, Cysteine proteinases superfamily protein (.1) Lus10000917 [exp] 57 / 4e-08 AT1G09730 514 / 1e-169 Cysteine proteinases superfamily protein (.1.2) Lus10030622 [exp] 54 / 2e-07 AT1G60220 253 / 7e-77 OVERLY TOLERANT TO SALT 1, UB-like protease 1D (.1) Lus10030867 [exp] 52 / 8e-07 AT1G60220 250 / 2e-76 OVERLY TOLERANT TO SALT 1, UB-like protease 1D (.1) Lus10020445 [exp] 45 / 0.0002 AT4G33620 404 / 6e-129 Cysteine proteinases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G221500 [exp] 445 / 2e-152 AT4G15880 436 / 3e-149 EARLY IN SHORT DAYS 4, Cysteine proteinases superfamily protein (.1) Potri.010G013700 [exp] 355 / 2e-116 AT4G15880 322 / 8e-104 EARLY IN SHORT DAYS 4, Cysteine proteinases superfamily protein (.1) Potri.010G040600 [exp] 71 / 6e-13 AT1G60220 410 / 3e-137 OVERLY TOLERANT TO SALT 1, UB-like protease 1D (.1) Potri.017G148266 [exp] 69 / 4e-12 AT2G01570 196 / 4e-54 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.004G070500 [exp] 64 / 1e-10 AT1G14920 191 / 7e-53 RESTORATION ON GROWTH ON AMMONIA 2, GIBBERELLIC ACID INSENSITIVE, GRAS family transcription factor family protein (.1) Potri.005G155600 [exp] 59 / 9e-09 AT1G09730 551 / 0.0 Cysteine proteinases superfamily protein (.1.2) Potri.002G105700 [exp] 58 / 1e-08 AT1G09730 580 / 0.0 Cysteine proteinases superfamily protein (.1.2) Potri.007G115400 [exp] 45 / 0.0001 AT1G09730 427 / 3e-135 Cysteine proteinases superfamily protein (.1.2) Potri.017G044000 [exp] 42 / 0.001 AT1G09730 452 / 4e-143 Cysteine proteinases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF02902 [flax] [poplar] Peptidase_C48 Ulp1 protease family, C-terminal catalytic domain
Representative CDS sequence Show only first row Show all	>Lus10023104 pacid=23170339 polypeptide=Lus10023104 locus=Lus10023104.g ID=Lus10023104.BGIv1.0 annot-version=v1.0 ATGGGCTATATGACCGGCGGTGATCGGAAGCGGGATTTGTACTCCTCTTACTCCCCCTATTTCTCTCCAGATTCTCATATTTCGAAGCGGCCCAGAGTTT CGCCGCTGCATTACATCCCTGACCGGACTCTGGCGATTTCAAATTCAACTGTCGATAAACTCTCCCGGTACCCTGAGAGGACGGCGAAATTGGTCCGGGA AGTTCACGCCCCTTGCAGGAATTTGAAGTACGGGCTAGGCGCTCTCCGGAGCAGCGGCGGTTCCGGTGGAACGGCGAGGTTTGTTGGTGTTGATAGAGAG AGTAAGGGGGTGGAGATGTTGTCTTCTGCTTTCAGTTATGCTAGAAGAGTCGCAATTGGAACTCTTAGGTTTGTAGGCATAGAGAAAGGAGTACCTAGAT TGGATGAGGAGAGCCAGAAGCCGGTAGATGTGCTGGAGTCGGATGATTCGGGCATAGACGAAGTTCACGTCATTGACGATAATGGTGATGATGTTGAAGA AAATGGGAAGGAAGTTAGGTCTATGGTTCTGGATGAAGTAGTGAATGACCAAGAGAATGATGTTACGGTTTTGGAAATGTGGTCTGGGGCTACTCTTGAC GGGAATATGGAGGTGGAGAAGGCTAGGGAGATGGTGGATTCTATGGGTTTGGACCGAAGTGGTTTGTCAGTTGAGGTGTACAAGAAGCTACTGGATAGCG CCCAGAGGAACGATCCAAATGTATTGAAGCGTCAGATTGAATACTATGAGACGAAGAGGTCTTCTTTGGAGGTGTTACGGTCGATGAGGAAACCACTGCA GAAACCAGTTGAGGAGCGGCCTTGTGAACCTTTTATACCCCTTACGGAGGAGGAAGAGACTGAAGTGAAACGTGCACTCTTAAATAGGAGCAGCAGGATG CTATTAGTTAATCATGATAGCTCGGGTATCGACATTACAGGGGAGATATTGCAGTGCCTTAAACCAGGTGCCTGGTTGAATGATGAGGTCATCAATGTCT ACCTTGAGTTGTTGAAAGAAAGGGAAAAGAGGGAGCCGAAGAAATTTCTTAAATGTCATTTCTGCAACACCTTTTTCTACAAAAAGTTAACAGGCGGTGG TAAGAGAACATTTGACTACAAAGCTGTCAAAAGGTGGACTACAGAACGGAAGTTGGGGTACATGCTGTTTGACTGTGAAAAGATATTTGTTCCTATTCAC CGGGAAATACACTGGTGTTTGGCCATTATTAACAAAAGGGATCGAAAGTTTCAGTATCTTGATTCACTGAAAGGAAAGGACTTGGCAGTGCTGGAAAATT TGGCTAGATATTATGTTGAAGAAGTGAAGGACAAGAGTAAAGTAGACATTGATATAAGCGATTGGGAATACGAGTTCCCCGAAGCCTTACCGGAACAACT AAATGGGTACGACTGCGGAATGTTCATGATAAAGTATGCTGATTTTTACAGCAGGGGTTTAGACCTTTGTTTCTCCCAGGAAAACATGCCGTATTTCCGG CTGAGAACAGCGAAGGAGATTCTAAGACTGAAGGCTGACTAA
AA sequence Show only first row Show all	>Lus10023104 pacid=23170339 polypeptide=Lus10023104 locus=Lus10023104.g ID=Lus10023104.BGIv1.0 annot-version=v1.0 MGYMTGGDRKRDLYSSYSPYFSPDSHISKRPRVSPLHYIPDRTLAISNSTVDKLSRYPERTAKLVREVHAPCRNLKYGLGALRSSGGSGGTARFVGVDRE SKGVEMLSSAFSYARRVAIGTLRFVGIEKGVPRLDEESQKPVDVLESDDSGIDEVHVIDDNGDDVEENGKEVRSMVLDEVVNDQENDVTVLEMWSGATLD GNMEVEKAREMVDSMGLDRSGLSVEVYKKLLDSAQRNDPNVLKRQIEYYETKRSSLEVLRSMRKPLQKPVEERPCEPFIPLTEEEETEVKRALLNRSSRM LLVNHDSSGIDITGEILQCLKPGAWLNDEVINVYLELLKEREKREPKKFLKCHFCNTFFYKKLTGGGKRTFDYKAVKRWTTERKLGYMLFDCEKIFVPIH REIHWCLAIINKRDRKFQYLDSLKGKDLAVLENLARYYVEEVKDKSKVDIDISDWEYEFPEALPEQLNGYDCGMFMIKYADFYSRGLDLCFSQENMPYFR LRTAKEILRLKAD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G15880		ATESD4, ESD4	EARLY IN SHORT DAYS 4, Cystein...		Lus10023104 [exp]	0	1
AT1G65660		SMP1	SWELLMAP 1, Pre-mRNA splicing ...		Lus10028956 [exp]	8.1	0.8740
AT3G14460			LRR and NB-ARC domains-contain...		Lus10039548 [exp]	8.4	0.8564
AT3G24490	Trihelix		Alcohol dehydrogenase transcri...		Lus10017725 [exp]	18.3	0.8310
AT4G10430			TMPIT-like protein (.1.2.3)		Lus10008294 [exp]	24.5	0.8481
AT1G09220			Pentatricopeptide repeat (PPR)...		Lus10011341 [exp]	26.9	0.8452
AT5G27260			unknown protein		Lus10037335 [exp]	27.9	0.7836
AT2G04865			Aminotransferase-like, plant m...		Lus10007358 [exp]	28.2	0.7968
AT5G51410			LUC7 N_terminus domain-contain...		Lus10031732 [exp]	30.3	0.8437
AT1G12680		PEPKR2	phosphoenolpyruvate carboxylas...		Lus10036464 [exp]	30.7	0.8442
AT5G12230		MED19A	unknown protein		Lus10002150 [exp]	33.3	0.8457

Compare expression of checked genes

Lus10023104 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.