Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15660 208 / 2e-57 CENP-C CENP-C HOMOLOGUE, centromere protein C (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011470 [exp] 1152 / 0 AT1G15660 226 / 8e-64 CENP-C HOMOLOGUE, centromere protein C (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G056600 [exp] 278 / 1e-82 AT1G15660 230 / 2e-65 CENP-C HOMOLOGUE, centromere protein C (.1) Potri.001G178200 [exp] 265 / 6e-78 AT1G15660 125 / 2e-29 CENP-C HOMOLOGUE, centromere protein C (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10023105 pacid=23170411 polypeptide=Lus10023105 locus=Lus10023105.g ID=Lus10023105.BGIv1.0 annot-version=v1.0 ATGTCGAATTTGCAGGATCCGCTTCAAGGATATGGCGGCCTCTCTCTCTTCACTCGCACCTTTCCTTCTCTTCCTGACGATCCCCTCTCCTCTCACAATT TCCTCAAATCCCTGCCTGTGCAGAATTCGGAGAAGCTCGTAGAGCAGGTGAAGAGTATACTAAGTGACGGTTCCAAGCTTCCAGCCGTGGATCCTGCGCC GTCTAAAGAGAACGGTGAAGCAGTTGGTGGTAATCATCCTATGGAGAATCCTCGAGAGAGAAGGCCAGGGCTAGGGCGTAAGCGTGCTCGGTTCTCTTTG CTTCCTAGCTCCAGTCAGCCTAGTGTTAGTTTGGAACGGAGTTTGGATTTTGATAAGCTGAAAGATCCGGAGGAATTCTTTAAGGCTTATGAAAGATTAG AAAATGCCAAGAAGGAGATAGCCAAGCAGACAGGGAATATCCAAACTGGTATCAATCAGCCTGGTGCTCTAATGGCTTCACGTCCTCATCGACCTGGAAT TCCCGGGAGATCTAGGACTGTGAAATACAAACATCTATACCCTACAATGCAGTTGGAAGAAAGTCTGGAAGCAGAGCTGCCCAATCCATCTACTGACTGG GTGCAACCAGAGGTGGCAGACAAAATTGGTACATCAGAAGAGCAACATAAACCGGATAATGTTTCTTCAGAAGAAGCAGAACTCGCTGTTGCAGAGGCTG AGGGTTCCACGAACAAACTTTTGGATGATTTGGGTGAGTTGCTTTCTCAAGAAGGCATTGATGAGGATGGTGCGGTGCGTTTGCTGGAGGACAGATTGCA GATCAAGCCGCTAAACATCAGTAAATTAAACCTCCCAGAGTTGCATCAAAAGATCGATTTGGAGCCTTCAAGACGAAGGAAATTCGACAAGCCTAGACAT GCACTTTCGGATATTCATAATATCTTGAGAGAAACCGGGCGTAAAAGTCCTCTGATACTGAAAAAAGCAGCAACTTCTGTTTTAAGTTTCGGTTCTCCTA CTCCACCAAAAAGCCCTTTTACTTTAGTCTCTTTACTGCAAAAGTTGAGCTCACAATCAGACCCATTGAGCGATCCATTTGCTGTGCCTGACATTGATTC ATTATCTGAAAGAAATACTTGTCACAAGAGAGATGTCAGCAAGGTTGGTGCTTCAAAAGAAGTTGATCCTCTCATCATTGATGAGGATGACGACACAATT GGTGGTAGCAATTCTCCCGCAGTTGCAGATTTCAGTATTCTAAATGACAGATCAACAGAGTGTGATAAGGCCACTATAAGTTCCGGTGTGGAGGATGGAC CCAGCAAGTTTTGTGCTGAGGTGGAAGGCAAGAACGGCGCTGTGCATGAGGAGGGAAATGAGAAATTGGAGGAGAGTGGTAAGGCCACTATAAGTTCTGG TGGGGAGGAGAGACCCAGCAAGTTTTGTGCTGAGGTGGAAGGCAAGAATGACACTGTGAATGAGGAGGGAAATGAGAATTTGGAAGAGAGTGGTGCGGCA GAGCAGCTGAAGGAGATGGAACCTGTGCATTCCGCACAACCTAGTCTGAGTGACGAGGAAACTATTCCAACAGGTTGCAGTAATCAAAATGAACGTGATC CATGTGGCCCTGAGGTACCTGAACATTGTGAGATGGGTGGATTCTCAGAATTCCAGAGCAGTGCTCCAGAAGAAGACCAAGTTAATCCTCCGGATAAGCT CCATGAGAATATTACTGTGGAACCTTCAGCAGTCGGTGTAAAGGAGCCCGGTAAAAGAAATACTCGCAAACGCAACGGATGCATGAGTAAGTTGATGACT AAGAAGCAAAGACGTACAGCAACCAAACCGAGCGTAGTAGACGAACGGTTCGACTCCAATGACGCACCGCAATTAAATGCTCCGGATTGTGAGAAGGAAA CAATTCAAGAATCTCCGGTGGCATCAGTTGACCAGCAAACCAGACCGAAAAGACGACCGGTTAAGGGAAGGGAAAGCCGAGCATTGTCTCGAAGGAAAAG CCTTACAGGTGCCGGTTCTTCGTACTCAGCAGGTGGGGTGAGGCGAAGCACTAGGATTCGGTCTAGGCCTTTAGAGTACTGGAAAGGAGAGAGGTTTCTG TACGGTCGCATTCATGAAAGTTTGGCTACAGTGATCGGGATCAAGTACGAGACTCCAACGAAAGACGAAGCGAAACCACCCAGGTTGAAGGTGAAGTCGT ATGTCTCGGACGAGTACAAGCATCTCGTGGAGCTAGCTGCATTGGATTGA
AA sequence Show only first row Show all	>Lus10023105 pacid=23170411 polypeptide=Lus10023105 locus=Lus10023105.g ID=Lus10023105.BGIv1.0 annot-version=v1.0 MSNLQDPLQGYGGLSLFTRTFPSLPDDPLSSHNFLKSLPVQNSEKLVEQVKSILSDGSKLPAVDPAPSKENGEAVGGNHPMENPRERRPGLGRKRARFSL LPSSSQPSVSLERSLDFDKLKDPEEFFKAYERLENAKKEIAKQTGNIQTGINQPGALMASRPHRPGIPGRSRTVKYKHLYPTMQLEESLEAELPNPSTDW VQPEVADKIGTSEEQHKPDNVSSEEAELAVAEAEGSTNKLLDDLGELLSQEGIDEDGAVRLLEDRLQIKPLNISKLNLPELHQKIDLEPSRRRKFDKPRH ALSDIHNILRETGRKSPLILKKAATSVLSFGSPTPPKSPFTLVSLLQKLSSQSDPLSDPFAVPDIDSLSERNTCHKRDVSKVGASKEVDPLIIDEDDDTI GGSNSPAVADFSILNDRSTECDKATISSGVEDGPSKFCAEVEGKNGAVHEEGNEKLEESGKATISSGGEERPSKFCAEVEGKNDTVNEEGNENLEESGAA EQLKEMEPVHSAQPSLSDEETIPTGCSNQNERDPCGPEVPEHCEMGGFSEFQSSAPEEDQVNPPDKLHENITVEPSAVGVKEPGKRNTRKRNGCMSKLMT KKQRRTATKPSVVDERFDSNDAPQLNAPDCEKETIQESPVASVDQQTRPKRRPVKGRESRALSRRKSLTGAGSSYSAGGVRRSTRIRSRPLEYWKGERFL YGRIHESLATVIGIKYETPTKDEAKPPRLKVKSYVSDEYKHLVELAALD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G15660		CENP-C	CENP-C HOMOLOGUE, centromere p...		Lus10023105 [exp]	0	1
AT1G26480		GF14IOTA, GRF12	general regulatory factor 12 (...		Lus10041141 [exp]	4.2	0.7939
AT2G02120		PDF2.1, LCR70	LOW-MOLECULAR-WEIGHT CYSTEINE-...		Lus10019226 [exp]	4.7	0.8033
AT3G43210		TES, ATNACK2	TETRASPORE, ARABIDOPSIS NPK1-A...		Lus10005181 [exp]	8.9	0.8051
AT3G52210			S-adenosyl-L-methionine-depend...		Lus10038644 [exp]	12.7	0.8083
					Lus10027307 [exp]	13.7	0.8471
AT1G34360			translation initiation factor ...		Lus10032318 [exp]	15.0	0.8105
AT3G63530		BB2, BB	BIG BROTHER, RING/U-box superf...		Lus10016416 [exp]	17.7	0.8123
AT5G43990		SDG18, SUVR2	SET DOMAIN PROTEIN 18, SET-dom...		Lus10024947 [exp]	18.1	0.7476
AT1G17820			Putative integral membrane pro...		Lus10036188 [exp]	30.0	0.8019
AT5G20950			Glycosyl hydrolase family prot...		Lus10034848 [exp]	34.9	0.8084

Compare expression of checked genes

Lus10023105 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.