Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38030 614 / 0 Rhamnogalacturonate lyase family protein (.1) AT2G22620 607 / 0 Rhamnogalacturonate lyase family protein (.1.2) AT4G37950 595 / 0 Rhamnogalacturonate lyase family protein (.1) AT4G24430 586 / 0 Rhamnogalacturonate lyase family protein (.1) AT1G09910 586 / 0 Rhamnogalacturonate lyase family protein (.1) AT1G09880 562 / 0 Rhamnogalacturonate lyase family protein (.1) AT1G09890 560 / 0 Rhamnogalacturonate lyase family protein (.1) AT1G65210 178 / 1e-50 Galactose-binding protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012720 [exp] 811 / 0 AT2G22620 706 / 0.0 Rhamnogalacturonate lyase family protein (.1.2) Lus10004281 [exp] 617 / 0 AT2G22620 818 / 0.0 Rhamnogalacturonate lyase family protein (.1.2) Lus10019231 [exp] 599 / 0 AT2G22620 800 / 0.0 Rhamnogalacturonate lyase family protein (.1.2) Lus10039627 [exp] 594 / 0 AT2G22620 785 / 0.0 Rhamnogalacturonate lyase family protein (.1.2) Lus10028212 [exp] 582 / 0 AT1G09890 981 / 0.0 Rhamnogalacturonate lyase family protein (.1) Lus10029552 [exp] 562 / 0 AT2G22620 740 / 0.0 Rhamnogalacturonate lyase family protein (.1.2) Lus10005979 [exp] 531 / 2e-178 AT1G09880 767 / 0.0 Rhamnogalacturonate lyase family protein (.1) Lus10030233 [exp] 505 / 2e-169 AT4G24430 776 / 0.0 Rhamnogalacturonate lyase family protein (.1) Lus10000684 [exp] 506 / 8e-169 AT1G09910 842 / 0.0 Rhamnogalacturonate lyase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G004500 [exp] 630 / 0 AT2G22620 807 / 0.0 Rhamnogalacturonate lyase family protein (.1.2) Potri.006G218500 [exp] 617 / 0 AT2G22620 842 / 0.0 Rhamnogalacturonate lyase family protein (.1.2) Potri.002G110000 [exp] 596 / 0 AT1G09890 968 / 0.0 Rhamnogalacturonate lyase family protein (.1) Potri.005G151500 [exp] 590 / 0 AT1G09910 979 / 0.0 Rhamnogalacturonate lyase family protein (.1) Potri.002G110200 [exp] 579 / 0 AT1G09890 892 / 0.0 Rhamnogalacturonate lyase family protein (.1) Potri.002G110100 [exp] 569 / 0 AT1G09890 810 / 0.0 Rhamnogalacturonate lyase family protein (.1) Potri.002G110300 [exp] 558 / 0 AT4G24430 929 / 0.0 Rhamnogalacturonate lyase family protein (.1) Potri.011G006200 [exp] 525 / 5e-177 AT1G09910 663 / 0.0 Rhamnogalacturonate lyase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0103 [flax] [poplar] Gal_mutarotase PF06045 [flax] [poplar] Rhamnogal_lyase Rhamnogalacturonate lyase family
Representative CDS sequence Show only first row Show all	>Lus10023106 pacid=23170424 polypeptide=Lus10023106 locus=Lus10023106.g ID=Lus10023106.BGIv1.0 annot-version=v1.0 ATGGAATTGTGTAAATTAACTTGGCAATTTTACATCACATTGATATTATGTCTCGCGACGCAGTCGGAATCTTCCGGTCACCCGGGCGGCATTCATGTCA ACCCACATGGCGGGGCGAAACAAGCTTCCGGTCACCCGGGCGGCATTCATAACACCTCACATGGCGCGGCGAAACAAGCTTCCGGTCACCCGGGCGGCAT TCACATCACCCCACATGGCGCGGCGAAACAAGCTTCCGGTCACCCGGGCGGCATTCACATCACCCCACATGGCGCGGCGAAACAAGCTTCCGGTCACCCG GGCGGCATTCACATCACCCCACATGGCGCGGCGAAACAAGCTTCCGGTCACCCGGGCGGCATTCACATCACCCCACATGGCGCGGCGAAACAAGCTTCCG GTCACCCGGGCGGCATTCACATCACCCCACATGGCGCGGCGAAACAAGCTTCCGGTCACCCGGGCGGCATTCACATCACCCCACATGGCGCGGCGAAACA AGCTTCCGGTCACCCGGGCGGCATTCACATCACCCCACATGGCGCGGCGAAACAAGCTTCCGGTCACCCGGGCGGCATTCATATCACCCCACCTGGCGCG GTGAAACACCCTTCCGGTCACCCGGGCGGCTTTAATACCACCCCACCTGGCGCGGTGAAACTCACGTCCGATGATAAACATGTGACCATCGACAATGGGA TCATGCAACTAGTTTTGTCAAACCCTTCGGGACACATTAGTGCGATCAAATATCATGGGGCTAACAACTTGTTGGATACATATGAACCTCAATTATATGG AGGGTATTTTGACGTTGCTTTTCAATCTCTTCCTGGAAAAGAAGGAAAAGTAGAAATTGTGTCGACGACAAAATATACGATCATAACACAGAAAGAAGAT ATAGTGGAAGTTTCTTTCTCTCGAACATGGAGTCCAGGAGCACCATCTTATCAGGTTCCACTCAATGTTGACAAAAGATATATCGTACGAAAAGGCGACT CTGGATTTTATGCGTATGTAGTCGTGGAAAAATTAAAAGGATGGCCTGACGTGGACATGAATTTACATCGCATGGCCTTCAAACCAAACAAAACCTTGTT CAACTACATGGCTCTGACAGACGAAATCCAGCTGGTGATGCCGGTTGAAGCTGATCGGGTAGCTGGGACACCCTTGGCATACAAAGAAGCGGTGCAACTC ACGCATCCGGTATCAGACCCGAAACTGAAAGATCAGGTTGACGACAAGTATGAATATACTTTAGAGAAGAAAGATCTCAAATTGAAAGGTTGGATTTCCG ATATGGCCAACCTAGGGCTGTGGTTCATCGCCCCTAGCGATGAATACATGAACGGTGGACCTAAGAAAAAGGAGCTTACGTGTCATTGCGGACCCACTTG TGTTATGATTTTCACTAGCATACACACTTATGGGTTAGATCTCTTCACAGAGTACCGAAATGGAGAGCCTTGGAAGAAAGTGTTTGGACCTATTTTCATA TATCTAAATTCCAATGGGGATCGTACAACTCTATGGAATGATGCCAAATTGCAGTTGGAAAAAGAAAAACGAATGTGGCCATACAGCTTCGTCCAGCATC CAGATTATCTCCCTGCAGCTCAGAGAGGAATTGTCACTGGAAAATTACTCGTCGACGACAAGTATGTAAGCCCCACTCCGACACAAGCATCCAGAGCATC CGTGGGGCTGGCGATGCCAGGGACGACAGATGATGCATGGCAGCTCGAAATCAAGGGATATAATTTCTGGACCGAAGCCGACGATCATGGAAATTTCGTG ATTAGAAACGTGAGGCCTGGAGATTACAACTTGTATGGTTACGTTCCCGGCGTCGTCGGCAGTTTTAGACACCGTCAACTTATCACCGTTAAACCCGGTG ATAATATTAATCTAGGTCGGGTTGTGTTTACGCCTCCGAGAAGCGGACCTACACTATGGGAAATCGGAATTCCTGATCGTTCCGCTAACGAATTCTTTGT CCCGGATCCGGATCCGAAATTCGTAAACACGTTCTGGCTCAATAAACCAAAAGACAAGTATAGACAATACGGATTGTGGGCTCGATATCCCGAGTTATAC CCTAAGGAGGATCTCGTTTTCGAAGTCGGAGTCAGCAAATATGAGAAGGATTGGTATTTTGAGCATGTTTTGAGGTCGGATGGTCATATTTTCAATCCCA CAATCTGGAAGGTAGTCTTCGATCTGCCGGAAGTAGTTCCAGGGAATTATGCCATTCAGATGGCATTGGCGGCTGCCCAAATGACGAATACATTTGTTTA CATAAACGATCCAAAGGCGAAAAGAGCACACTTTTCAACGGGAACTGTAGGGACGGACAACGCAATTGCAAGACACGGAAATCACGGAATGTATAGGTTC TTCAACGGGACCCTTCCTTCCACATTGTTTGTGAAGGGCAGGAACACAATGTTCATCCGGCCAGCAAAGTCGACTACTTATGCTTTCGCCGGAGTAATGT ATGATTACATACGTCTCGAAGCGCCTCCTACCTCCGGACCCCACCCGGTAACGGTGCTTTAA
AA sequence Show only first row Show all	>Lus10023106 pacid=23170424 polypeptide=Lus10023106 locus=Lus10023106.g ID=Lus10023106.BGIv1.0 annot-version=v1.0 MELCKLTWQFYITLILCLATQSESSGHPGGIHVNPHGGAKQASGHPGGIHNTSHGAAKQASGHPGGIHITPHGAAKQASGHPGGIHITPHGAAKQASGHP GGIHITPHGAAKQASGHPGGIHITPHGAAKQASGHPGGIHITPHGAAKQASGHPGGIHITPHGAAKQASGHPGGIHITPHGAAKQASGHPGGIHITPPGA VKHPSGHPGGFNTTPPGAVKLTSDDKHVTIDNGIMQLVLSNPSGHISAIKYHGANNLLDTYEPQLYGGYFDVAFQSLPGKEGKVEIVSTTKYTIITQKED IVEVSFSRTWSPGAPSYQVPLNVDKRYIVRKGDSGFYAYVVVEKLKGWPDVDMNLHRMAFKPNKTLFNYMALTDEIQLVMPVEADRVAGTPLAYKEAVQL THPVSDPKLKDQVDDKYEYTLEKKDLKLKGWISDMANLGLWFIAPSDEYMNGGPKKKELTCHCGPTCVMIFTSIHTYGLDLFTEYRNGEPWKKVFGPIFI YLNSNGDRTTLWNDAKLQLEKEKRMWPYSFVQHPDYLPAAQRGIVTGKLLVDDKYVSPTPTQASRASVGLAMPGTTDDAWQLEIKGYNFWTEADDHGNFV IRNVRPGDYNLYGYVPGVVGSFRHRQLITVKPGDNINLGRVVFTPPRSGPTLWEIGIPDRSANEFFVPDPDPKFVNTFWLNKPKDKYRQYGLWARYPELY PKEDLVFEVGVSKYEKDWYFEHVLRSDGHIFNPTIWKVVFDLPEVVPGNYAIQMALAAAQMTNTFVYINDPKAKRAHFSTGTVGTDNAIARHGNHGMYRF FNGTLPSTLFVKGRNTMFIRPAKSTTYAFAGVMYDYIRLEAPPTSGPHPVTVL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G22620			Rhamnogalacturonate lyase fami...		Lus10023106 [exp]	0	1
AT5G64410		ATOPT4	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10035644 [exp]	1.4	0.8967
AT2G13620		ATCHX15	CATION/H+ EXCHANGER 15, cation...		Lus10039138 [exp]	4.1	0.9252
					Lus10000351 [exp]	7.5	0.8839
AT2G48140		EDA4	embryo sac development arrest ...		Lus10042613 [exp]	8.5	0.7337
					Lus10002886 [exp]	8.7	0.8839
AT5G55050			GDSL-like Lipase/Acylhydrolase...		Lus10021543 [exp]	9.7	0.8839
AT2G42620		PPS, PP2, ORE9,...	PLEIOTROPIC PHOTOSIGNALING, OR...		Lus10002715 [exp]	10.2	0.7184
AT5G58660			2-oxoglutarate (2OG) and Fe(II...		Lus10031865 [exp]	10.7	0.8839
AT5G02930			F-box/RNI-like superfamily pro...		Lus10032255 [exp]	11.5	0.8839
AT2G02850		ARPN	plantacyanin (.1)		Lus10028396 [exp]	12.3	0.8839

Compare expression of checked genes

Lus10023106 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.