Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40360 864 / 0 Transducin/WD40 repeat-like superfamily protein (.1) AT5G56130 55 / 6e-08 THO3, AtTEX1 Transducin/WD40 repeat-like superfamily protein (.1) AT5G67320 52 / 9e-07 HOS15 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) AT1G62020 51 / 4e-06 Coatomer, alpha subunit (.1) AT5G16750 50 / 4e-06 TOZ TORMOZEMBRYO DEFECTIVE, Transducin family protein / WD-40 repeat family protein (.1) AT5G01770 49 / 2e-05 RAPTOR2, ATRAPTOR1A, RAPTOR1A RAPTOR2, HEAT repeat ;WD domain, G-beta repeat protein protein (.1) AT2G21390 48 / 3e-05 Coatomer, alpha subunit (.1) AT1G73720 47 / 3e-05 SMU1 SUPPRESSORS OF MEC-8 AND UNC-52 1, transducin family protein / WD-40 repeat family protein (.1) AT1G61210 47 / 5e-05 DWA3 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) AT3G16650 47 / 6e-05 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011471 [exp] 1182 / 0 AT2G40360 932 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10027113 [exp] 53 / 5e-07 AT5G56130 555 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10042333 [exp] 52 / 6e-07 AT3G18140 572 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10008356 [exp] 52 / 9e-07 AT5G56130 583 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10040752 [exp] 51 / 3e-06 AT1G62020 2133 / 0.0 Coatomer, alpha subunit (.1) Lus10016481 [exp] 51 / 3e-06 AT1G62020 2130 / 0.0 Coatomer, alpha subunit (.1) Lus10014674 [exp] 50 / 3e-06 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10024972 [exp] 50 / 4e-06 AT5G67320 819 / 0.0 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) Lus10006916 [exp] 49 / 7e-06 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G222500 [exp] 934 / 0 AT2G40360 959 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.003G009600 [exp] 906 / 0 AT2G40360 914 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.019G087200 [exp] 58 / 1e-08 AT1G71840 515 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Potri.013G116900 [exp] 54 / 3e-07 AT1G71840 473 / 6e-167 transducin family protein / WD-40 repeat family protein (.1) Potri.001G470900 [exp] 52 / 8e-07 AT5G56130 586 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.006G078900 [exp] 51 / 2e-06 AT4G04940 1394 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Potri.012G074800 [exp] 51 / 3e-06 AT1G62020 2113 / 0.0 Coatomer, alpha subunit (.1) Potri.015G069700 [exp] 51 / 3e-06 AT1G62020 2100 / 0.0 Coatomer, alpha subunit (.1) Potri.005G144400 [exp] 50 / 4e-06 AT5G67320 671 / 0.0 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) Potri.007G050100 [exp] 50 / 4e-06 AT5G67320 645 / 0.0 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat CL0186 [flax] [poplar] PF08145 [flax] [poplar] BOP1NT BOP1NT (NUC169) domain
Representative CDS sequence Show only first row Show all	>Lus10023107 pacid=23170314 polypeptide=Lus10023107 locus=Lus10023107.g ID=Lus10023107.BGIv1.0 annot-version=v1.0 ATGGGCGCTTCTTCGTCACCTCACAAAGAGGACGGCGACGTCTTCAAGCTCACCGCCGAATCTAGTTCCAGCGATGATTTGAGCTACGCTGAAGAAGAAG AAGAAACAGATGATGATGATGGTGTTGAAGTCAGTGGCTCTTCTGATGATGAAAGTGGAGAATTCTTCTCTGAACTTGATGATGAATCTGGAGAATCTAA CTCTGAACACAGTGGTACGGATGATGATGGGGTGGGAGATGGAGAAGAAAGTGGAGATGCTGACTCTGATGCTGAACGTAATCAAGCCGTTGAAGAGAGC GATTCTTCAGAGGATGAGGTGGCTCCTCGAAACACAATTGGAGATGTTCCTTTAGTTTGGTACAAGGATGAACCACATATTGGATATGACATTAAAGGCA AGAAGCTAACCAAAAAAGAAAGACAAGACAAGCTTGATTCGTATCTGGCTACAGTTGATGACTCTAAAACCTGGCGCACGATTTACGATGAGTACAATGA TGAGTATGTCGAGGTGACAAAAAAAGAAGTTGGAATGATTCGTAAAGTGATCGACGGACAGGCACCACATGGAGATTTTGATCCATATGCGCCATATGTC GACTGGCTTAAACATCTTGATGCTATACATCCATTGTCAAATGCACCAGAACCAAAGCGGAGGTTTATCCCTTCAAAGTGGGAAGCCAAAGTGGTTGTTA GATTGGTCAGGGCTATTCGTAAAGGATGGATTAAATTTGATAAGCCAAAAGAAGAACCTCGTATCTACAGCCTGTGGGAAGAGGATTCTGCTCCTGCAGA GAAGGCTGGACATTTGTTACATATACCTCCGCCGAAGCCAAAGCTACCAGGTCATGAGGAGTCGTACAATCCTTCTTTAGAGTTCATCCCATCGCAGGAA GAAATTACTGCTATCCAGGTGATGGATGAAGAGGAAAGACCTAATTTTATACCTAAAAGTTATCCATCTATGAGAAGCATTCCAGCATATGAGGGTGCTG TTAAGGAACGTTTTGAGCGTTGTTTGGACTTATACTTGTGCCCTAGAGTCCGGAGGAAGCGAATTAATATAGATCCTCAGTCTTTGAAACCGAAGTTACC CAGTCGAAAGGATCTGAAGCCTTACCCATCCACGTGCTACATTGAGTATAAAGGTCACAAAGGTCCAGTTGTGTCGATTTCAACTGAAGCTTCAGGAGAA TGGTTGGCCTCAGGTTCTGCTGATGGGACTGTACGAATATGGGATGTCGATTCTGGTAGATGTCTTAAAGTTTGGGAGTTCGATGAAGGCATCAAGTTTG TATCCTGGAATCCTGAACTTCCTATATTGGCAGCCTCCACGGGCCAGGATGTGCATCTCCTGAACACGGGTCTAGGAAATGAAGAGATGCAAACGAAAGT CAGGGAACTTCTTCATGTTGAGAAAGCTGAAGTATCAGATGATTCCAAAAAACCAATAACTATCTGGAGTCAAGATGATAGATATGGAGGAATCAAGTTG AGACATTCAAAGACTGTCTCTTCTGTGGAATGGCATCGCAAAGGAGACTATTTTTCAACCATAATGCCGGCAGGCGACACGAAGTCAGTTCAATTACACC AGCTTTCTAAGAAGCTTACGGACAAGCTTCCATTCAAGTTGAAAGGACTTGCAGTGTCATCGGTTTTCCATCCTACACGTTCCGTATTCTTGGCTGCGAC AAAGAAGTACATAAGGGTGTACGATTTGGTGAAAGGGAAATTGATTAAGAAGCTTGACCCTAATCTCCGTGAGATCTCGTCTATGTCCATTCATCGTGGC GGTGATAATCTGATTGTTGGAAGCAGAGAGGGAAAGTTAGCTTGGTTTGACATGGACCTTTCCTCAAAACCTTACAAGGTTCTAAAGTGTCACAACCGGA GCGACATCAACAATGTTACGTTCCATCGTTCGTACCCGTTATTTGCTTCGGCTTCGGATGACTGCACTGCATACGTCTTCCATGGGATGGTGTATTCTGA TCTTAATCAGGATCCTCTGATAGTTCCGTTGGAGATTCTTCGTGGTCATAACACCACTGCCGGAAGAGGAGTGATGGACTGCAAGTTCCACCCGCGACAA CCATGGTTATTCACTGCTGGTGCAGATTCAGTGATCAAATTGTATTGCCATTATTGA
AA sequence Show only first row Show all	>Lus10023107 pacid=23170314 polypeptide=Lus10023107 locus=Lus10023107.g ID=Lus10023107.BGIv1.0 annot-version=v1.0 MGASSSPHKEDGDVFKLTAESSSSDDLSYAEEEEETDDDDGVEVSGSSDDESGEFFSELDDESGESNSEHSGTDDDGVGDGEESGDADSDAERNQAVEES DSSEDEVAPRNTIGDVPLVWYKDEPHIGYDIKGKKLTKKERQDKLDSYLATVDDSKTWRTIYDEYNDEYVEVTKKEVGMIRKVIDGQAPHGDFDPYAPYV DWLKHLDAIHPLSNAPEPKRRFIPSKWEAKVVVRLVRAIRKGWIKFDKPKEEPRIYSLWEEDSAPAEKAGHLLHIPPPKPKLPGHEESYNPSLEFIPSQE EITAIQVMDEEERPNFIPKSYPSMRSIPAYEGAVKERFERCLDLYLCPRVRRKRINIDPQSLKPKLPSRKDLKPYPSTCYIEYKGHKGPVVSISTEASGE WLASGSADGTVRIWDVDSGRCLKVWEFDEGIKFVSWNPELPILAASTGQDVHLLNTGLGNEEMQTKVRELLHVEKAEVSDDSKKPITIWSQDDRYGGIKL RHSKTVSSVEWHRKGDYFSTIMPAGDTKSVQLHQLSKKLTDKLPFKLKGLAVSSVFHPTRSVFLAATKKYIRVYDLVKGKLIKKLDPNLREISSMSIHRG GDNLIVGSREGKLAWFDMDLSSKPYKVLKCHNRSDINNVTFHRSYPLFASASDDCTAYVFHGMVYSDLNQDPLIVPLEILRGHNTTAGRGVMDCKFHPRQ PWLFTAGADSVIKLYCHY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G40360			Transducin/WD40 repeat-like su...		Lus10023107 [exp]	0	1
AT2G32415			Polynucleotidyl transferase, r...		Lus10015114 [exp]	2.6	0.9383
AT5G25757			RNA polymerase I-associated fa...		Lus10037897 [exp]	2.8	0.9469
AT5G11200			DEAD/DEAH box RNA helicase fam...		Lus10002021 [exp]	3.2	0.9403
AT1G77030			hydrolases, acting on acid anh...		Lus10028644 [exp]	3.2	0.9473
AT5G57990		UBP23	ubiquitin-specific protease 23...		Lus10036607 [exp]	3.5	0.9395
AT5G61770		PPAN	PETER PAN-like protein (.1.2.3...		Lus10030190 [exp]	4.0	0.9362
AT2G39810		HOS1	HIGH EXPRESSION OF OSMOTICALLY...		Lus10010990 [exp]	4.2	0.9362
AT2G39990		AteIF3f, EIF2	Arabidopsis thaliana eukaryoti...		Lus10040218 [exp]	4.7	0.9329
AT5G17930			MIF4G domain-containing protei...		Lus10019865 [exp]	5.1	0.9148
AT3G13460		ECT2	evolutionarily conserved C-ter...		Lus10002624 [exp]	5.7	0.9423

Compare expression of checked genes

Lus10023107 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.