Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02205 244 / 2e-74 CER1 ECERIFERUM 1, Fatty acid hydroxylase superfamily (.1.2.3) AT1G02190 238 / 3e-72 Fatty acid hydroxylase superfamily (.1.2) AT2G37700 225 / 1e-68 Fatty acid hydroxylase superfamily (.1.2) AT5G57800 106 / 2e-24 CER3, FLP1, YRE, WAX2 FACELESS POLLEN 1, ECERIFERUM 3, Fatty acid hydroxylase superfamily (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011473 [exp] 417 / 4e-146 AT1G02205 310 / 7e-102 ECERIFERUM 1, Fatty acid hydroxylase superfamily (.1.2.3) Lus10011472 [exp] 395 / 2e-137 AT1G02205 303 / 5e-99 ECERIFERUM 1, Fatty acid hydroxylase superfamily (.1.2.3) Lus10019510 [exp] 258 / 7e-80 AT1G02205 763 / 0.0 ECERIFERUM 1, Fatty acid hydroxylase superfamily (.1.2.3) Lus10015499 [exp] 100 / 9e-23 AT5G57800 877 / 0.0 FACELESS POLLEN 1, ECERIFERUM 3, Fatty acid hydroxylase superfamily (.1) Lus10019971 [exp] 98 / 7e-22 AT5G57800 879 / 0.0 FACELESS POLLEN 1, ECERIFERUM 3, Fatty acid hydroxylase superfamily (.1) Lus10008895 [exp] 86 / 7e-18 AT5G57800 885 / 0.0 FACELESS POLLEN 1, ECERIFERUM 3, Fatty acid hydroxylase superfamily (.1) Lus10023210 [exp] 81 / 3e-16 AT5G57800 882 / 0.0 FACELESS POLLEN 1, ECERIFERUM 3, Fatty acid hydroxylase superfamily (.1) Lus10023109 [exp] 59 / 1e-10 AT1G02205 87 / 3e-21 ECERIFERUM 1, Fatty acid hydroxylase superfamily (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G180300 [exp] 250 / 7e-77 AT1G02205 793 / 0.0 ECERIFERUM 1, Fatty acid hydroxylase superfamily (.1.2.3) Potri.014G152900 [exp] 246 / 3e-75 AT1G02205 789 / 0.0 ECERIFERUM 1, Fatty acid hydroxylase superfamily (.1.2.3) Potri.014G152301 [exp] 245 / 5e-75 AT1G02205 790 / 0.0 ECERIFERUM 1, Fatty acid hydroxylase superfamily (.1.2.3) Potri.014G152600 [exp] 245 / 5e-75 AT1G02205 788 / 0.0 ECERIFERUM 1, Fatty acid hydroxylase superfamily (.1.2.3) Potri.006G177500 [exp] 113 / 6e-27 AT5G57800 890 / 0.0 FACELESS POLLEN 1, ECERIFERUM 3, Fatty acid hydroxylase superfamily (.1) Potri.018G099400 [exp] 111 / 2e-26 AT5G57800 851 / 0.0 FACELESS POLLEN 1, ECERIFERUM 3, Fatty acid hydroxylase superfamily (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04116 [flax] [poplar] FA_hydroxylase Fatty acid hydroxylase superfamily
Representative CDS sequence Show only first row Show all	>Lus10023110 pacid=23170370 polypeptide=Lus10023110 locus=Lus10023110.g ID=Lus10023110.BGIv1.0 annot-version=v1.0 ATGGCATCAAACCCAGGCATTCTCACACATTGGCCATGGGAATCCCTAGGCTCCTTCAAGTACTTGATTCTGGCTCCATGGGTGGCTCAAAGCACTTTCA AGTACTTGGGCGGTGGCTCCAAGGAAGTGTCCAGTTTCCTTATCTTCCCATTCATCCTCTCCAGGATTCTTCACAACAAGGTTTGGATCCATGTCTCCCG CCGGAAAACTGCTACTCCAGCCAATCGGATCGTCGACAAGCCCATCGATGACGACCAACTTCGCAGAGAAAGCAATTGGGATGACCAAATCCTGATGACG GGCTTACTAATGTACATAGTGACGATTGTGTTTGAAGAACAAACGTCGAGTTTACCAATCTGGAATACAGACGGCGTCGTTTTGTCAGCCTTGATACATG CTGGACCAGTTGAGTTTCTGTACTATTGGCTTCACAGAGCTTTGCACCACCATTTCCTCTACTCTCGATATCACTCCCATCACCATTCCTCCATCGCTAC CCAACCCATCACTGCTGTGATCCATCCATTTGTGGAAACAATGGCGTACATAGTGTTGTTTGGGATCCCAATGATGACAGTGCTTCTCACCGGAACTGGA TCATACACTGCCATCTTCGGTTACATCTTCTTCCTTGATTTCATGAACAACATGGGCCACTGCAACTTCCGATCACCCTTCGACTACTTCGACGAATCAT CCGCTGGCCCAATCACGACGTCCCTCTCTGCTCCTCTCAAGCTCCTTTTCTACACGCCTTCAGCACTAGCTGCTAGATTTGTTGACACATTTTTAAAGAA GGTAGGTGGACTGGAAATGGCATCAAAACCAGGCATTCTCACCCATTGGCCATGGGAATCTCTAGGCTCCTTCAAGTACTTGATTCTGGCTCCATGGGTG GCTCACAGCACTTACAAGTACTACTTCCATGTGGATGGATCAAAGTACACATCCAGTTTCCTCATCTTCCCATTCATCCTCCTCAGGATTCTTCACAACA ATATTTGGATCTCATTCTCCCGCCGGAAAACTGCTACTCCGGCCAACAGGATCGTCGACAAGTCCATCGATGCCGACCAGCTCGACAGGGAAAGCAATTG GTTAGCTCGAGTTACCCTTAATCTCTCGAGTGATCAACTCTTATCTCGTAAACAATTTGCTAAAAGTAATACCGACCCTGCAACCTTTTTCCGTAGAATA TTGTCCACTCACGGATTCGTTTTCGGGTTCAATAGATCGAGTATATAA
AA sequence Show only first row Show all	>Lus10023110 pacid=23170370 polypeptide=Lus10023110 locus=Lus10023110.g ID=Lus10023110.BGIv1.0 annot-version=v1.0 MASNPGILTHWPWESLGSFKYLILAPWVAQSTFKYLGGGSKEVSSFLIFPFILSRILHNKVWIHVSRRKTATPANRIVDKPIDDDQLRRESNWDDQILMT GLLMYIVTIVFEEQTSSLPIWNTDGVVLSALIHAGPVEFLYYWLHRALHHHFLYSRYHSHHHSSIATQPITAVIHPFVETMAYIVLFGIPMMTVLLTGTG SYTAIFGYIFFLDFMNNMGHCNFRSPFDYFDESSAGPITTSLSAPLKLLFYTPSALAARFVDTFLKKVGGLEMASKPGILTHWPWESLGSFKYLILAPWV AHSTYKYYFHVDGSKYTSSFLIFPFILLRILHNNIWISFSRRKTATPANRIVDKSIDADQLDRESNWLARVTLNLSSDQLLSRKQFAKSNTDPATFFRRI LSTHGFVFGFNRSSI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G02205		CER1	ECERIFERUM 1, Fatty acid hydro...		Lus10023110 [exp]	0	1
AT4G19420			Pectinacetylesterase family pr...		Lus10034766 [exp]	1.0	0.9125
AT2G46810	bHLH	bHLH070	basic helix-loop-helix (bHLH) ...		Lus10010101 [exp]	2.8	0.8989
AT1G02205		CER1	ECERIFERUM 1, Fatty acid hydro...		Lus10011473 [exp]	4.2	0.8896
AT5G18590			Galactose oxidase/kelch repeat...		Lus10034163 [exp]	6.1	0.8356
AT2G46810	bHLH	bHLH070	basic helix-loop-helix (bHLH) ...		Lus10012603 [exp]	6.5	0.8516
AT2G29420		GST25, ATGSTU7	GLUTATHIONE S-TRANSFERASE 25, ...		Lus10041654 [exp]	9.9	0.8669
AT5G13930		ATCHS, TT4, CHS	TRANSPARENT TESTA 4, CHALCONE ...		Lus10033717 [exp]	13.2	0.8704
AT1G69935		SHW1	short hypocotyl in white light...		Lus10013285 [exp]	15.1	0.8671
AT1G55370		NDF5	NDH-dependent cyclic electron ...		Lus10020267 [exp]	16.2	0.8565
AT4G34160		CYCD3;1	CYCLIN D3;1 (.1)		Lus10014089 [exp]	19.0	0.8465

Compare expression of checked genes

Lus10023110 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.