Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G80410 1244 / 0 OMA, EMB2753 OMISHA, EMBRYO DEFECTIVE 2753, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011474 [exp] 1622 / 0 AT1G80410 1341 / 0.0 OMISHA, EMBRYO DEFECTIVE 2753, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G178000 [exp] 1361 / 0 AT1G80410 1332 / 0.0 OMISHA, EMBRYO DEFECTIVE 2753, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) Potri.003G056700 [exp] 1336 / 0 AT1G80410 1285 / 0.0 OMISHA, EMBRYO DEFECTIVE 2753, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) Potri.001G177700 [exp] 604 / 0 AT1G80410 613 / 0.0 OMISHA, EMBRYO DEFECTIVE 2753, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) Potri.001G177802 [exp] 68 / 3e-14 AT1G80410 61 / 4e-13 OMISHA, EMBRYO DEFECTIVE 2753, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF07719 [flax] [poplar] TPR_2 Tetratricopeptide repeat CL0020 [flax] [poplar] TPR PF12569 [flax] [poplar] NARP1 NMDA receptor-regulated protein 1
Representative CDS sequence Show only first row Show all	>Lus10023111 pacid=23170412 polypeptide=Lus10023111 locus=Lus10023111.g ID=Lus10023111.BGIv1.0 annot-version=v1.0 ATGGGGGCTTCCTTGCCTCCCAAAGAGGCCAACCTCTTCAAGCTCATCGTCAAATCATATGAAACCAAACAGTATAAGAAGGGTTTAAAGGCTGCAGATG CTATACTGAAAAAATTCCCCAACCATGGAGAAACTCTGTCGATGAAGGGCTTGACTTTAAATTGCATGGATCGTAAACCTGAAGCGTACGAACTTGTCCG CCTTGGGCTGAAGAATGATCTTAAGAGTCATGTTTGCTGGCATGTTTATGGTCTCCTCTACCGGTCTGATAGGGAGTATAGAGAAGCTATCAAATCTTAT CGGAACGCACTGAGAATAGATCCAGACAACATTGAAATACTGCGTGACTTGTCACTGTTGCAGGCACAAATGCGGGATTTGGCTGGTTTTGTCCAGACTA GGCAACAACTACTGACCCTGAAGCCAAATCATAGGATGAATTGGATTGGTTTCGCTGTTGCTCACCACTTAAATTCAAAATTTTTGTTCTTTGATTTTGG ACATGATTCTACCTTTACTCTTCGACTGATCAGTGATAACTTCCTTACCAGTGCATCAAAAGCAATTGATATTCTGGAAGCATATGAAGGAACATTGGAG GCTGATTATCCTCCAGATAATGAGCGATGTGAACATGGAGAAATGCTTTTGTATAAGATATCTTTATTAGAAGAATGTGGCTCTTATGAGACAGCTCTTG ATCAGTTGCACAAAAATCAATCAAAAATTGTTGATAAATTGTCATACAAGGAACAAGAGGTTACTCTACTAGTAAAGCTTGGGCGTCTGGAAGAAGGTTC TAGCATGTACAAGACACTACTCACTATGAATCCTGATAACTACAGATATTATGAAGGTCTACAAAAGTGTGCAGGGCTATATTCTGAAAATGGGCATTAC TCTTCCGATGAAATTGATCAGTTGGATGCTTTATACAAGTCATTGAGTCAGGACTACACGTGGTCGTCAGCTGTTAAGAGAATACCGCTTGATTTTCTCC AAGGAGAGAAGTTCTGTGAAGCTGCTGATAAGTATATACGACCTCTCCTCACGAAGGGAGTTCCTTCATTATTCTCGGATCTGTCCCCTTTGTATGACCA TCCTGGCAAGGCTGAGGTTTTGGAGAAACTTATTCTTGAGTTGGAGCATTCAATTAAGACCAATGGGACATACCCTGGAAGAGTGGACAAAGAGCCCCCT TCGACACTCATGTGGACATTGTTTTACTTAGCCCAGCATTATGACAGAAGGGGACAGAGTGACGTTGCTCTTACAAAGATTGAGGAAGCGATAGCCCACA CTCCAACAGTGATTGATTTGTATTTGGTCAAGAGCCGTATTCTGAAGCATGCTGGGGATTTACCAGCAGCTGCTGCATTGGCAGATGAAGCTCGGTGTAT GGATCTTGCTGACCGGTACATAAACAGCGAATGTGTCAAGCGTATGTTGCAGGCAGATCAGGTGACTTTGGCGGAGAAGACAGTTGTTTTGTTCACCAAA GATGGGGACCAGCATAACAACCTTCATGATATGCAGTGCATGTGGTATGAACTTGCCTCTGGTGAAAGTTATTTCCGCCAAGGAGATCTAGGGCTGGCTC TCAAGAAATTTTTGGCTGTGGAGAAGCATTACACTGATATTACAGAAGATCAATTTGATTTCCACTCATATTGCCTAAGGAAGATGACTCTTCGTGCGTA TGTTGCAATGCTTAAATTTCAAGACCGCCTCCATTCACATTTGTACTTTCAGAAAGCAGCCTCCAAAGCTATCAGGTGTTATTTGAAGTTATTTGATTCT CCTTATAAGTCTAGCAATGAAGAAGATGACGAAACATCAAAGTTGCTGCCTTCTCAGAAAAAGAAATTAAGACAAAAGCAGAGGAAAGCTGAAGCCCGAG CTAAGAAGGAAGCGGATGTGAAAAATGAAGAACCTGCGGCTACTGGTGCCTCCAAGTCTGGGAAGAAACATGTCAAACCTGTAGACCCAGACCCAAAGGG AGAAAAGTTGCTGCAGGTTGAGGAACCATTACTTGAAGCTACCAAATACCTCAAGTTGCTTCAGAAGAATTCTCCCAACTCTTTGGAAACACACTTACTT TCCTTTGAAGTAAACATGAGAAAGCAAAAGATTCTGCTTGCTCTTCAGGCCTTAAAGCAGTTGATGAGGTTGGATGTGGAAAACCCAGATTCTCATCGAT GTTTGATTAGGTTTTTCCATAAAGTAGACTCAATGGCTGCTCCTGTCACCGATGCTGATAAACTTATTTGGAGTGTCCTAGAAGCCGAGCGTTCCTCACT AAGCCATTTGCACGAAAAGTCGCTGCTGGAGGCAAACATGTTATTCCTCGAGAAACATAAAGAGTCGTTGATGCATAGAGCTGCAGTTGCAGAAATGCTC TTTGTCTTAGAACCTAGCAAGAAATCTGAAGCCATTAAGTTGATTGAAGAGTCATCCAACAACACCGTCTCAAGTGGAGGAGCACTTGGAGCAGTAAATG AATGGAAGCTTAAGGACTCCATTGCTGTCCACAAGTTGATACACACAGTTCTTACGGATGAAGATGCTGCAATGAGGTGGAAACAATGTTGCGCTGAGTA CTTCCCTCACTCGACATATTTCGAAGGCCGTCTAAGCTCTGCAATGCCCGATTCGGTATACAATAAAGTAGGAAACTCAGCCGAAAATGGTAAAGTTACA AATTCCATCGTGTCAAATGGGAAGCTAGAGGCATCATTTAAGGAGCTTACCGTCTGA
AA sequence Show only first row Show all	>Lus10023111 pacid=23170412 polypeptide=Lus10023111 locus=Lus10023111.g ID=Lus10023111.BGIv1.0 annot-version=v1.0 MGASLPPKEANLFKLIVKSYETKQYKKGLKAADAILKKFPNHGETLSMKGLTLNCMDRKPEAYELVRLGLKNDLKSHVCWHVYGLLYRSDREYREAIKSY RNALRIDPDNIEILRDLSLLQAQMRDLAGFVQTRQQLLTLKPNHRMNWIGFAVAHHLNSKFLFFDFGHDSTFTLRLISDNFLTSASKAIDILEAYEGTLE ADYPPDNERCEHGEMLLYKISLLEECGSYETALDQLHKNQSKIVDKLSYKEQEVTLLVKLGRLEEGSSMYKTLLTMNPDNYRYYEGLQKCAGLYSENGHY SSDEIDQLDALYKSLSQDYTWSSAVKRIPLDFLQGEKFCEAADKYIRPLLTKGVPSLFSDLSPLYDHPGKAEVLEKLILELEHSIKTNGTYPGRVDKEPP STLMWTLFYLAQHYDRRGQSDVALTKIEEAIAHTPTVIDLYLVKSRILKHAGDLPAAAALADEARCMDLADRYINSECVKRMLQADQVTLAEKTVVLFTK DGDQHNNLHDMQCMWYELASGESYFRQGDLGLALKKFLAVEKHYTDITEDQFDFHSYCLRKMTLRAYVAMLKFQDRLHSHLYFQKAASKAIRCYLKLFDS PYKSSNEEDDETSKLLPSQKKKLRQKQRKAEARAKKEADVKNEEPAATGASKSGKKHVKPVDPDPKGEKLLQVEEPLLEATKYLKLLQKNSPNSLETHLL SFEVNMRKQKILLALQALKQLMRLDVENPDSHRCLIRFFHKVDSMAAPVTDADKLIWSVLEAERSSLSHLHEKSLLEANMLFLEKHKESLMHRAAVAEML FVLEPSKKSEAIKLIEESSNNTVSSGGALGAVNEWKLKDSIAVHKLIHTVLTDEDAAMRWKQCCAEYFPHSTYFEGRLSSAMPDSVYNKVGNSAENGKVT NSIVSNGKLEASFKELTV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G80410		OMA, EMB2753	OMISHA, EMBRYO DEFECTIVE 2753,...		Lus10023111 [exp]	0	1
AT1G80410		OMA, EMB2753	OMISHA, EMBRYO DEFECTIVE 2753,...		Lus10011474 [exp]	1.0	0.9766
AT3G52140			tetratricopeptide repeat (TPR)...		Lus10015708 [exp]	2.4	0.9453
AT3G60740		TFCD, EMB133, C...	TITAN 1, TUBULIN FOLDING COFAC...		Lus10030293 [exp]	2.6	0.9423
AT5G25757			RNA polymerase I-associated fa...		Lus10038622 [exp]	3.5	0.9611
AT5G14520			pescadillo-related (.1)		Lus10000618 [exp]	3.9	0.9598
AT3G11830			TCP-1/cpn60 chaperonin family ...		Lus10008406 [exp]	4.9	0.9586
AT1G15440		ATPWP2	\(PERIODIC TRYPTOPHAN PROTEIN ...		Lus10034114 [exp]	5.9	0.9520
AT5G14520			pescadillo-related (.1)		Lus10000357 [exp]	6.0	0.9355
AT5G19820		EMB2734	embryo defective 2734, ARM rep...		Lus10013763 [exp]	6.3	0.9280
AT1G59760		AtMTR4	homolog of yeast MTR4, RNA hel...		Lus10024454 [exp]	7.3	0.9289

Compare expression of checked genes

Lus10023111 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.