Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G80400 387 / 2e-132 RING/U-box superfamily protein (.1) AT4G32600 348 / 4e-116 RING/U-box superfamily protein (.1) AT4G26580 148 / 1e-40 RING/U-box superfamily protein (.1.2) AT5G55970 147 / 4e-40 RING/U-box superfamily protein (.1.2) AT1G12760 126 / 1e-32 Zinc finger, C3HC4 type (RING finger) family protein (.1), Zinc finger, C3HC4 type (RING finger) family protein (.2) AT4G11680 125 / 7e-32 Zinc finger, C3HC4 type (RING finger) family protein (.1) AT3G61180 124 / 2e-31 RING/U-box superfamily protein (.1) AT1G68070 120 / 2e-30 Zinc finger, C3HC4 type (RING finger) family protein (.1) AT1G63170 111 / 8e-27 Zinc finger, C3HC4 type (RING finger) family protein (.1) AT2G01735 103 / 2e-24 RIE1 RING-finger protein for embryogenesis (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011475 [exp] 666 / 0 AT1G80400 459 / 9e-161 RING/U-box superfamily protein (.1) Lus10013144 [exp] 361 / 1e-121 AT4G32600 477 / 2e-167 RING/U-box superfamily protein (.1) Lus10008106 [exp] 317 / 4e-105 AT4G32600 410 / 1e-141 RING/U-box superfamily protein (.1) Lus10033075 [exp] 184 / 2e-54 AT4G32600 189 / 2e-56 RING/U-box superfamily protein (.1) Lus10017750 [exp] 181 / 3e-53 AT4G32600 192 / 1e-57 RING/U-box superfamily protein (.1) Lus10022567 [exp] 151 / 2e-41 AT5G55970 418 / 1e-146 RING/U-box superfamily protein (.1.2) Lus10041359 [exp] 116 / 2e-28 AT3G61180 400 / 6e-139 RING/U-box superfamily protein (.1) Lus10034587 [exp] 115 / 2e-27 AT1G68070 489 / 6e-172 Zinc finger, C3HC4 type (RING finger) family protein (.1) Lus10021801 [exp] 108 / 1e-25 AT1G68070 478 / 1e-169 Zinc finger, C3HC4 type (RING finger) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G247000 [exp] 380 / 3e-129 AT4G32600 498 / 1e-175 RING/U-box superfamily protein (.1) Potri.018G034400 [exp] 371 / 1e-125 AT4G32600 464 / 7e-162 RING/U-box superfamily protein (.1) Potri.001G371200 [exp] 156 / 1e-43 AT5G55970 424 / 3e-149 RING/U-box superfamily protein (.1.2) Potri.011G094800 [exp] 153 / 2e-42 AT5G55970 412 / 1e-144 RING/U-box superfamily protein (.1.2) Potri.002G155200 [exp] 127 / 1e-32 AT3G61180 366 / 3e-125 RING/U-box superfamily protein (.1) Potri.014G075000 [exp] 124 / 1e-31 AT3G61180 315 / 1e-105 RING/U-box superfamily protein (.1) Potri.008G134900 [exp] 116 / 9e-29 AT1G68070 392 / 2e-136 Zinc finger, C3HC4 type (RING finger) family protein (.1) Potri.003G123300 [exp] 115 / 4e-28 AT1G12760 400 / 7e-138 Zinc finger, C3HC4 type (RING finger) family protein (.1), Zinc finger, C3HC4 type (RING finger) family protein (.2) Potri.010G106300 [exp] 108 / 4e-26 AT1G68070 412 / 2e-144 Zinc finger, C3HC4 type (RING finger) family protein (.1) Potri.010G072700 [exp] 74 / 3e-14 AT5G43420 300 / 7e-100 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10023112 pacid=23170406 polypeptide=Lus10023112 locus=Lus10023112.g ID=Lus10023112.BGIv1.0 annot-version=v1.0 ATGGATGTGACCTCTTCTAATCTAATTTGCATCGCTCAAACCGATCATTCCCCTTTGCTGATGGAGCGTATCGAGATGCATCATGACCACGAGCATATAA TCGACATGAACAGGAACAATGATGCTTCTTCACCCAGCTCATCCCATGATCACGATGATGATCTTCTTTATACCGAAGAAAGACCTTCAAGCGCTGGAAC GGCCACTCGCCAGACTTCTTCTTCAACCATGACAAGTAGATTAAACTCTAGGAATTCGACGTCGTTTTCGAGGAGGGGCGATTCATACGGTAGGCGTCGC AGGAGCCCCTTGAATTCCGGGTTGTGGATCTCGGTTGAGTTGCTTGTTACGGTGTGCCAGATTGTAGCTTCTGTTGTGGTCTTGGCGCTCTCGAGAAACG AACACCCGAAAGCCCCGTTATTTGCGTGGGTTGTGGGTTATGCATCGGGGTGCGTGGCTACACTTCCAATACTTTACTGGCGGTTTCGTACTCGAAACGA AGGTGTCCTGCAAGATCCTATGCAATCACGAGAAGGAGGTTTGCAAACTGGGATTCCTGATTCTGCTCCTTATACTGCCATCTCTATTAATCAGGAGGAG ACCATGGGAACTCCTACCAGGGCTGATCAACCGTCAGGGAATCTAAATGAAAGAATCAGTGGCGTAATGGATCATCTGAAGATGGGTTTGGATTGCTTCT TTGCAGTGTGGTTTGTTGTAGGCAATGTGTGGATTTTTGGAGGTCATGCCAGTCCAGACGATGCACCGAAATTGTACAAGTATGTGTTTTTGATACACGA CCTCTCGTTTTCTCCTTGTCCCGAGGCTAAAGCTTACAAGTGCTTTGTTCTCCTCTTGCCTTGCAGATTGTGTATAGTTTTCCTTACTTTTAGCTGTATA GGATATGCAATGCCGTTTATTTTATGTGCAACAATCTGCTGTTGCTTGCCTTGCATTATCTCTCTCCTTGGCTTCCGAGAGGAGTTCTCCCAAACTAGAG GAGCCAGTGTCGAATGTATAAATAGTCTGCCAACTTACAAGTTCAAGTCAAAGGAAACCGGCAGCTTCAGAGATCATGACGAGTCCTCCGAAATGAGCGA TGGCGGGATATTGGCTGCTGGGACCGAGAAGGAGCGTATGATATCTGGAGAAGATGCTGTGTGCTGCATTTGCTTAAACGAGTATGAAGATGACGAGGAA CTGAGGGAGCTACCGTGCGCGCATGTATTCCATGTTGAGTGCGTGGATAAGTGGCTCAAGATTAATGCATCATGCCCACTCTGTAAAAATGAGATCTGTG AAAGTGGAGAAGATGCCTCTCCTCCATCTCCCACCAACCAACACTGA
AA sequence Show only first row Show all	>Lus10023112 pacid=23170406 polypeptide=Lus10023112 locus=Lus10023112.g ID=Lus10023112.BGIv1.0 annot-version=v1.0 MDVTSSNLICIAQTDHSPLLMERIEMHHDHEHIIDMNRNNDASSPSSSHDHDDDLLYTEERPSSAGTATRQTSSSTMTSRLNSRNSTSFSRRGDSYGRRR RSPLNSGLWISVELLVTVCQIVASVVVLALSRNEHPKAPLFAWVVGYASGCVATLPILYWRFRTRNEGVLQDPMQSREGGLQTGIPDSAPYTAISINQEE TMGTPTRADQPSGNLNERISGVMDHLKMGLDCFFAVWFVVGNVWIFGGHASPDDAPKLYKYVFLIHDLSFSPCPEAKAYKCFVLLLPCRLCIVFLTFSCI GYAMPFILCATICCCLPCIISLLGFREEFSQTRGASVECINSLPTYKFKSKETGSFRDHDESSEMSDGGILAAGTEKERMISGEDAVCCICLNEYEDDEE LRELPCAHVFHVECVDKWLKINASCPLCKNEICESGEDASPPSPTNQH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G80400			RING/U-box superfamily protein...		Lus10023112 [exp]	0	1
AT1G12680		PEPKR2	phosphoenolpyruvate carboxylas...		Lus10041132 [exp]	1.4	0.8914
AT3G59910			Ankyrin repeat family protein ...		Lus10010581 [exp]	2.0	0.8829
AT1G12450			SNARE associated Golgi protein...		Lus10006674 [exp]	3.0	0.8582
AT1G02290			unknown protein		Lus10028606 [exp]	5.9	0.8179
AT4G33630		EX1	EXECUTER1, Protein of unknown ...		Lus10020435 [exp]	6.5	0.8193
AT3G58030			RING/U-box superfamily protein...		Lus10016255 [exp]	7.2	0.8342
AT5G55600			agenet domain-containing prote...		Lus10016606 [exp]	8.9	0.8267
AT5G45360			F-box family protein (.1)		Lus10035689 [exp]	9.5	0.8004
AT5G02620		ATANK1, ANK1	ankyrin-like1 (.1)		Lus10025288 [exp]	12.0	0.7948
AT3G11890			Sterile alpha motif (SAM) doma...		Lus10017225 [exp]	13.7	0.8017

Compare expression of checked genes

Lus10023112 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.