Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15550 171 / 2e-51 ATGA3OX1, GA4 GA REQUIRING 4, ARABIDOPSIS THALIANA GIBBERELLIN 3 BETA-HYDROXYLASE 1, gibberellin 3-oxidase 1 (.1) AT1G80340 144 / 2e-41 ATGA3OX2, GA4H ARABIDOPSIS THALIANA GIBBERELLIN-3-OXIDASE 2, gibberellin 3-oxidase 2 (.1) AT4G21690 122 / 5e-33 ATGA3OX3 ARABIDOPSIS THALIANA GIBBERELLIN 3-OXIDASE 3, gibberellin 3-oxidase 3 (.1) AT1G80330 114 / 8e-30 ATGA3OX4 ARABIDOPSIS THALIANA GIBBERELLIN 3-OXIDASE 4, gibberellin 3-oxidase 4 (.1) AT1G78550 71 / 4e-14 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G17020 70 / 8e-14 ATSRG1, SRG1 senescence-related gene 1 (.1) AT3G19010 69 / 8e-14 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3) AT1G55290 69 / 2e-13 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G08640 69 / 2e-13 ATFLS1, FLS flavonol synthase 1 (.1.2) AT3G13610 69 / 2e-13 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011476 [exp] 320 / 1e-109 AT1G15550 412 / 1e-143 GA REQUIRING 4, ARABIDOPSIS THALIANA GIBBERELLIN 3 BETA-HYDROXYLASE 1, gibberellin 3-oxidase 1 (.1) Lus10013137 [exp] 126 / 4e-36 AT4G21690 140 / 1e-40 ARABIDOPSIS THALIANA GIBBERELLIN 3-OXIDASE 3, gibberellin 3-oxidase 3 (.1) Lus10008100 [exp] 129 / 2e-35 AT4G21690 273 / 8e-90 ARABIDOPSIS THALIANA GIBBERELLIN 3-OXIDASE 3, gibberellin 3-oxidase 3 (.1) Lus10013135 [exp] 127 / 1e-34 AT1G15550 263 / 4e-86 GA REQUIRING 4, ARABIDOPSIS THALIANA GIBBERELLIN 3 BETA-HYDROXYLASE 1, gibberellin 3-oxidase 1 (.1) Lus10013134 [exp] 120 / 7e-32 AT4G21690 242 / 3e-77 ARABIDOPSIS THALIANA GIBBERELLIN 3-OXIDASE 3, gibberellin 3-oxidase 3 (.1) Lus10030934 [exp] 81 / 2e-17 AT1G17020 337 / 2e-114 senescence-related gene 1 (.1) Lus10040112 [exp] 79 / 5e-17 AT1G17020 332 / 1e-112 senescence-related gene 1 (.1) Lus10028068 [exp] 79 / 8e-17 AT5G08640 429 / 1e-151 flavonol synthase 1 (.1.2) Lus10030995 [exp] 76 / 6e-16 AT1G17020 339 / 2e-115 senescence-related gene 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G176600 [exp] 201 / 3e-63 AT1G15550 452 / 1e-159 GA REQUIRING 4, ARABIDOPSIS THALIANA GIBBERELLIN 3 BETA-HYDROXYLASE 1, gibberellin 3-oxidase 1 (.1) Potri.003G057400 [exp] 201 / 5e-63 AT1G15550 451 / 2e-159 GA REQUIRING 4, ARABIDOPSIS THALIANA GIBBERELLIN 3 BETA-HYDROXYLASE 1, gibberellin 3-oxidase 1 (.1) Potri.018G033600 [exp] 160 / 1e-47 AT1G15550 328 / 2e-111 GA REQUIRING 4, ARABIDOPSIS THALIANA GIBBERELLIN 3 BETA-HYDROXYLASE 1, gibberellin 3-oxidase 1 (.1) Potri.006G247700 [exp] 147 / 1e-42 AT1G15550 328 / 2e-111 GA REQUIRING 4, ARABIDOPSIS THALIANA GIBBERELLIN 3 BETA-HYDROXYLASE 1, gibberellin 3-oxidase 1 (.1) Potri.009G022800 [exp] 76 / 6e-16 AT1G17020 302 / 6e-101 senescence-related gene 1 (.1) Potri.010G200900 [exp] 76 / 7e-16 AT3G21420 288 / 4e-95 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G023550 [exp] 72 / 1e-15 AT3G21420 210 / 6e-68 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G023600 [exp] 74 / 3e-15 AT3G21420 511 / 0.0 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.002G086700 [exp] 71 / 5e-14 AT5G08640 432 / 9e-153 flavonol synthase 1 (.1.2) Potri.010G201000 [exp] 70 / 6e-14 AT3G21420 290 / 5e-96 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10023113 pacid=23170317 polypeptide=Lus10023113 locus=Lus10023113.g ID=Lus10023113.BGIv1.0 annot-version=v1.0 ATGCCATCCATCCAACTAGCCGATGCTTTCAGATCCCATCCAATCAACCTCCACCAAAAGCACCACCTAAACGACTTCACCTCCCTCAAAGAACTCCCCG ATTCCTACAAATGGTCCACCCGAATCAACCACGACGATGTTCGGACCAACGAACTGGTCCCTGTCATCGACCTCTCCCGACCAGACGCCATGAGGGAGAT CGGCCATGCATGCAGGGAGTGGGGGGTGTTCCAAGTCGTCAACCACGGTGTCCCCACCGAGGTTGTCGAGAGCATGGAGAAGAATGTCGGGGAGAAGTTC TTTGGATTGCCCATGTACGAAAAACTCAAAGCTGCTCGGTCCCCTGATGGGGTCTCTGGGTTCGGGTTGGCTCGGATTTCAATGTTCTTCCCTAAGCTCA TGTGGTCCGAAGGGTTCACCATAGTTGGTTCCCCTGCCGAGCATTTTATGAAAGTTTGGCCAGAGGATTACAGACAATTTTGGATGTCGATTGCGTACCT ATACGGGCCGCCTTCGAATGTTAGGATCTCGCCGGTGGGGAAACTCGTGGGGCCGGGGCAACCTCCATTGTATAGGGCGGTGACTTGGAGTGAGTACCTT GGGACTAAGGCCAAACACTTCAACAAAGCATTGTCTTCGGTTAGGTTGTGTGCTACTCCCATGAATGGACTGGTTGATGCAAGAGATGGTAGCAATAATA GAGTGAAAGTTGGGTAG
AA sequence Show only first row Show all	>Lus10023113 pacid=23170317 polypeptide=Lus10023113 locus=Lus10023113.g ID=Lus10023113.BGIv1.0 annot-version=v1.0 MPSIQLADAFRSHPINLHQKHHLNDFTSLKELPDSYKWSTRINHDDVRTNELVPVIDLSRPDAMREIGHACREWGVFQVVNHGVPTEVVESMEKNVGEKF FGLPMYEKLKAARSPDGVSGFGLARISMFFPKLMWSEGFTIVGSPAEHFMKVWPEDYRQFWMSIAYLYGPPSNVRISPVGKLVGPGQPPLYRAVTWSEYL GTKAKHFNKALSSVRLCATPMNGLVDARDGSNNRVKVG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G15550		ATGA3OX1, GA4	GA REQUIRING 4, ARABIDOPSIS TH...		Lus10023113 [exp]	0	1
AT1G13750			Purple acid phosphatases super...		Lus10036904 [exp]	5.2	0.7832
AT1G11360			Adenine nucleotide alpha hydro...		Lus10018515 [exp]	13.9	0.7451
AT4G14380			unknown protein		Lus10011818 [exp]	19.4	0.7402
AT5G25450			Cytochrome bd ubiquinol oxidas...		Lus10008081 [exp]	20.6	0.7413
AT5G25450			Cytochrome bd ubiquinol oxidas...		Lus10013113 [exp]	24.3	0.7558
AT3G02100			UDP-Glycosyltransferase superf...		Lus10003453 [exp]	24.8	0.7450
AT1G70780			unknown protein		Lus10031920 [exp]	28.1	0.7356
AT3G27210			unknown protein		Lus10035217 [exp]	42.3	0.7272
AT2G34200			RING/FYVE/PHD zinc finger supe...		Lus10025394 [exp]	57.4	0.6743
AT4G17370			Oxidoreductase family protein ...		Lus10028967 [exp]	59.9	0.6660

Compare expression of checked genes

Lus10023113 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.